Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABUE34_RS05140 Genome accession   NZ_CP158988
Coordinates   1055675..1056196 (-) Length   173 a.a.
NCBI ID   WP_070403281.1    Uniprot ID   -
Organism   Kozakia baliensis strain LTH 7215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1050675..1061196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE34_RS05115 (ABUE34_05115) - 1051387..1051557 (-) 171 WP_173402530.1 hypothetical protein -
  ABUE34_RS05125 (ABUE34_05125) - 1051745..1052218 (-) 474 WP_029603605.1 peptidylprolyl isomerase -
  ABUE34_RS05130 (ABUE34_05130) coaD 1052262..1052774 (-) 513 WP_029603603.1 pantetheine-phosphate adenylyltransferase -
  ABUE34_RS05135 (ABUE34_05135) gyrA 1052758..1055568 (-) 2811 WP_408887106.1 DNA gyrase subunit A -
  ABUE34_RS05140 (ABUE34_05140) ssb 1055675..1056196 (-) 522 WP_070403281.1 single-stranded DNA-binding protein Machinery gene
  ABUE34_RS05145 (ABUE34_05145) uvrA 1056365..1059355 (+) 2991 WP_367160685.1 excinuclease ABC subunit UvrA -
  ABUE34_RS05150 (ABUE34_05150) - 1059358..1060302 (+) 945 WP_367160686.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18922.79 Da        Isoelectric Point: 5.9940

>NTDB_id=1012180 ABUE34_RS05140 WP_070403281.1 1055675..1056196(-) (ssb) [Kozakia baliensis strain LTH 7215]
MAGSVNKVILVGNLGRDPETRNSQSGSKIVNMTIATSETWNDRNSGEKRERTEWHRVVIFNDRLADVAERFLRKGRKVYI
EGQLQTRKWTDQSGQERYTTEIVLDRFRGELVLIDSNRGGESEAGGGYESGPPRQLNAPRGGGGGMSQPQRSGGGSGGGW
DAPGGDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1012180 ABUE34_RS05140 WP_070403281.1 1055675..1056196(-) (ssb) [Kozakia baliensis strain LTH 7215]
ATGGCAGGCAGCGTCAATAAGGTAATTTTGGTCGGAAATCTGGGGCGCGACCCAGAGACGCGGAATTCGCAATCGGGGTC
GAAGATCGTCAACATGACGATTGCGACCTCCGAAACCTGGAACGACCGCAATTCGGGTGAGAAGCGCGAGCGGACCGAAT
GGCATCGCGTGGTGATCTTCAACGATCGTCTGGCCGATGTGGCGGAGCGTTTTTTGCGCAAGGGGCGCAAGGTTTACATC
GAAGGGCAATTGCAGACGCGTAAATGGACGGATCAATCCGGCCAGGAGCGTTATACGACCGAGATCGTGCTGGACCGTTT
CCGTGGCGAGTTGGTGCTGATCGACAGCAACCGTGGCGGAGAGTCCGAGGCGGGCGGTGGTTATGAGAGCGGGCCGCCGC
GCCAGTTGAATGCGCCCCGTGGTGGTGGCGGCGGGATGTCGCAGCCGCAGCGCAGCGGTGGCGGCAGTGGTGGTGGCTGG
GATGCGCCCGGCGGCGACCTGGACGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.774

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.486
  ssb Neisseria meningitidis MC58

40

100

0.428
  ssb Neisseria gonorrhoeae MS11

39.459

100

0.422

Multiple sequence alignment