Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABMK85_RS19895 Genome accession   NZ_CP158719
Coordinates   781444..781956 (-) Length   170 a.a.
NCBI ID   WP_011750041.1    Uniprot ID   A1B8M8
Organism   Paracoccus denitrificans strain XW11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 776444..786956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMK85_RS19870 (ABMK85_19870) - 776558..777502 (+) 945 WP_104490897.1 ABC transporter permease -
  ABMK85_RS19875 (ABMK85_19875) - 777499..778362 (+) 864 WP_287884763.1 ABC transporter permease -
  ABMK85_RS19880 (ABMK85_19880) - 778362..780032 (+) 1671 WP_231000611.1 ABC transporter ATP-binding protein -
  ABMK85_RS19885 (ABMK85_19885) - 780029..780889 (+) 861 WP_287884762.1 carbon-nitrogen hydrolase family protein -
  ABMK85_RS19890 (ABMK85_19890) - 780902..781447 (+) 546 WP_104490900.1 carboxymuconolactone decarboxylase family protein -
  ABMK85_RS19895 (ABMK85_19895) ssb 781444..781956 (-) 513 WP_011750041.1 single-stranded DNA-binding protein Machinery gene
  ABMK85_RS19900 (ABMK85_19900) - 782189..782836 (+) 648 WP_011750042.1 lytic transglycosylase domain-containing protein -
  ABMK85_RS19905 (ABMK85_19905) - 782899..783468 (-) 570 WP_041530412.1 lipid-binding SYLF domain-containing protein -
  ABMK85_RS19910 (ABMK85_19910) hemB 783542..784540 (-) 999 WP_287884761.1 porphobilinogen synthase -
  ABMK85_RS19915 (ABMK85_19915) - 784692..785258 (+) 567 WP_287884760.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18166.72 Da        Isoelectric Point: 6.4874

>NTDB_id=1012087 ABMK85_RS19895 WP_011750041.1 781444..781956(-) (ssb) [Paracoccus denitrificans strain XW11]
MAGSVNKVILVGNLGQDPEVRSFQNGGKVANLRIATSEQWKDRNTGERRERTEWHTVVIYSEPLVRVAEQFLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDSRGGAGGGGGRDEGYGGGSYGGGSSGGSSSGGGYSSGGGGGQSQS
RPDFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1012087 ABMK85_RS19895 WP_011750041.1 781444..781956(-) (ssb) [Paracoccus denitrificans strain XW11]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGGTCGGCAACCTGGGCCAAGACCCGGAGGTCCGCAGCTTCCAGAACGGCGG
CAAGGTCGCCAACCTGCGGATCGCCACCAGCGAGCAGTGGAAGGACCGCAACACCGGCGAGCGTCGCGAGCGCACGGAAT
GGCACACGGTGGTGATCTATTCCGAACCGCTGGTCCGCGTGGCCGAGCAATTCCTGAAAAAGGGCTCCAAGGTCTATGTC
GAAGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGAGCGGCAACGACCGCTATTCGACCGAGGTCGCGCTGCGCCCCTT
CCGCAGCGAGTTGCATATGCTCGATAGCCGCGGCGGCGCGGGCGGCGGCGGCGGCCGCGATGAAGGCTATGGCGGCGGCA
GTTACGGCGGTGGCTCTTCCGGCGGCAGCTCGTCCGGGGGCGGATATTCCTCGGGCGGCGGTGGCGGCCAGTCGCAGAGC
CGCCCCGATTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1B8M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.524
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.524
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.418
  ssb Neisseria meningitidis MC58

39.106

100

0.412

Multiple sequence alignment