Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPOKI102_RS08230 | Genome accession | NZ_CP006820 |
| Coordinates | 438906..439916 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664528.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki102 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 433906..444916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI102_RS02080 (HPOKI102_02200) | - | 434000..434374 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| HPOKI102_RS02085 (HPOKI102_02205) | - | 434664..435266 (+) | 603 | WP_000291620.1 | outer membrane protein | - |
| HPOKI102_RS02095 (HPOKI102_02215) | - | 435398..435805 (-) | 408 | WP_025275725.1 | hypothetical protein | - |
| HPOKI102_RS02100 (HPOKI102_02220) | - | 435808..436050 (-) | 243 | WP_000944405.1 | PP0621 family protein | - |
| HPOKI102_RS02105 (HPOKI102_02225) | rsmG | 436044..436580 (-) | 537 | WP_001068805.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPOKI102_RS02110 (HPOKI102_02230) | queA | 436577..437614 (-) | 1038 | WP_025275726.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPOKI102_RS02115 (HPOKI102_02235) | tatC | 437615..438364 (-) | 750 | WP_025275727.1 | twin-arginine translocase subunit TatC | - |
| HPOKI102_RS02120 (HPOKI102_02240) | tatB | 438357..438839 (-) | 483 | WP_025275728.1 | Sec-independent protein translocase protein TatB | - |
| HPOKI102_RS08230 (HPOKI102_02245) | ruvB | 438906..439916 (-) | 1011 | WP_000664528.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPOKI102_RS08235 (HPOKI102_02250) | panB | 439917..440729 (-) | 813 | WP_025275729.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPOKI102_RS02135 (HPOKI102_02255) | - | 440878..441600 (+) | 723 | WP_025275730.1 | hypothetical protein | - |
| HPOKI102_RS02140 (HPOKI102_02260) | - | 441590..442459 (+) | 870 | WP_025275731.1 | outer membrane beta-barrel protein | - |
| HPOKI102_RS02145 (HPOKI102_02265) | - | 442468..443412 (+) | 945 | WP_038418796.1 | outer membrane beta-barrel protein | - |
| HPOKI102_RS02150 (HPOKI102_02270) | - | 443422..444744 (+) | 1323 | WP_025275733.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37282.34 Da Isoelectric Point: 6.3684
>NTDB_id=101171 HPOKI102_RS08230 WP_000664528.1 438906..439916(-) (ruvB) [Helicobacter pylori oki102]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=101171 HPOKI102_RS08230 WP_000664528.1 438906..439916(-) (ruvB) [Helicobacter pylori oki102]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCGGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCGGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.917 |
100 |
0.979 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.475 |
90.179 |
0.473 |