Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H1W80_RS03570 Genome accession   NZ_LR822040
Coordinates   666966..667613 (-) Length   215 a.a.
NCBI ID   WP_180473491.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 661966..672613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS03555 (STHERMO_0747) holA 663717..664751 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  H1W80_RS03560 (STHERMO_0748) sodA 664845..665450 (+) 606 WP_180473489.1 superoxide dismutase SodA -
  H1W80_RS03565 (STHERMO_0749) - 665547..666926 (+) 1380 WP_180473490.1 serine hydrolase -
  H1W80_RS03570 (STHERMO_0750) cclA/cilC 666966..667613 (-) 648 WP_180473491.1 prepilin peptidase Machinery gene
  H1W80_RS03575 (STHERMO_0751) - 667722..668243 (+) 522 WP_011225768.1 Dps family protein -
  H1W80_RS03580 (STHERMO_0752) - 668332..668769 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  H1W80_RS03585 (STHERMO_0753) - 668880..669086 (+) 207 WP_002950395.1 YqgQ family protein -
  H1W80_RS03590 (STHERMO_0754) - 669079..670047 (+) 969 WP_082308904.1 ROK family glucokinase -
  H1W80_RS03595 (STHERMO_0755) typA 670185..672035 (+) 1851 WP_164178026.1 translational GTPase TypA -
  H1W80_RS03600 (STHERMO_0756) - 672055..672327 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24885.99 Da        Isoelectric Point: 8.2133

>NTDB_id=1011550 H1W80_RS03570 WP_180473491.1 666966..667613(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1125]
MLSILYFFLGTSLGSFIGLICDRFPEKSIMFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1011550 H1W80_RS03570 WP_180473491.1 666966..667613(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATGTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCATTACATTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTGGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae TIGR4

38.785

99.535

0.386
  cclA/cilC Streptococcus mitis NCTC 12261

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

37.85

99.535

0.377
  cclA/cilC Streptococcus pneumoniae D39

37.85

99.535

0.377
  cclA/cilC Streptococcus pneumoniae R6

37.85

99.535

0.377