Detailed information NTG1011501

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V8F66_RS10125
• Genome accession: NZ_CP158484
• Coordinates: 2178873..2179718 (-)
• Length: 281 a.a.
• NCBI ID: WP_350359619.1
• Uniprot ID: A0AAU7XVV3
• Organism: Vreelandella sp. SM1641
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2173873..2184718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8F66_RS10095 (V8F66_10050)	-	2174912..2175286 (+)	375	WP_008957328.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
V8F66_RS10100 (V8F66_10055)	-	2175889..2176176 (-)	288	WP_348646964.1	helix-turn-helix transcriptional regulator	-
V8F66_RS10105 (V8F66_10060)	-	2176577..2176936 (+)	360	WP_281662048.1	hypothetical protein	-
V8F66_RS10110 (V8F66_10065)	-	2176967..2177854 (-)	888	WP_350359617.1	DNA replication terminus site-binding protein	-
V8F66_RS10115 (V8F66_10070)	yacG	2177894..2178127 (-)	234	WP_179915176.1	DNA gyrase inhibitor YacG	-
V8F66_RS10120 (V8F66_10075)	coaE	2178161..2178763 (-)	603	WP_350359618.1	dephospho-CoA kinase	-
V8F66_RS10125 (V8F66_10080)	pilD	2178873..2179718 (-)	846	WP_350359619.1	A24 family peptidase	Machinery gene
V8F66_RS10130 (V8F66_10085)	pilC	2179795..2181024 (-)	1230	WP_350359620.1	type II secretion system F family protein	Machinery gene
V8F66_RS10135 (V8F66_10090)	pilB	2181028..2182800 (-)	1773	WP_281662052.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V8F66_RS10140 (V8F66_10095)	-	2183115..2183486 (+)	372	WP_281662053.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
V8F66_RS10145 (V8F66_10100)	-	2183778..2184227 (+)	450	WP_281662054.1	anti-virulence regulator CigR family protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30863.21 Da
• Isoelectric Point: 7.2000

>NTDB_id=1011501 V8F66_RS10125 WP_350359619.1 2178873..2179718(-) (pilD) [Vreelandella sp. SM1641]
MHYPPLIVWFMALLVGLCLGSFLNVVITRLPVMLMRHWRREARAALELDDEPSPRFNLATPGSLCPRCETPIAWHDNLPL
IGWIKRRGQCAECQTSISIQYPLVEMAGGLLALAVLALHGLTAESLFIYGACLMLLALAVIDFRTQLLPDIITLPLLWAG
LLFQLLFQPFMLSDAVIGVMVGYLSLWSFYWLFKLVTGKEGMGFGDFKLLAALGAWLGWSFLPLILILSAGLGAVVGLTA
QACAPRLRGKPLPFGPFLALAGWVALLVGDELMALYLSLLI

Nucleotide

• Length: 846 bp

>NTDB_id=1011501 V8F66_RS10125 WP_350359619.1 2178873..2179718(-) (pilD) [Vreelandella sp. SM1641]
ATGCATTACCCTCCACTGATTGTATGGTTCATGGCTTTATTGGTTGGGCTGTGCTTAGGCAGTTTTCTTAATGTTGTTAT
CACGCGCCTACCGGTCATGCTGATGCGCCATTGGCGCCGTGAGGCGCGTGCAGCGCTTGAACTGGATGACGAACCCTCAC
CACGCTTCAATTTGGCCACACCAGGCTCCCTGTGCCCCCGCTGCGAAACCCCGATCGCCTGGCACGACAACCTACCGCTG
ATTGGCTGGATTAAACGCCGCGGACAGTGTGCAGAGTGTCAAACAAGCATCAGCATCCAATATCCGCTGGTGGAAATGGC
CGGTGGCCTACTGGCCTTAGCGGTACTAGCGCTCCATGGCCTCACTGCAGAGTCATTGTTTATTTACGGTGCCTGCCTGA
TGCTGTTAGCACTCGCCGTAATCGATTTTCGCACCCAGTTATTGCCGGATATCATTACGCTCCCGCTACTATGGGCAGGC
TTACTTTTTCAGCTACTCTTCCAGCCGTTTATGCTCTCCGATGCCGTTATTGGTGTGATGGTGGGCTATCTTTCTCTATG
GAGTTTTTATTGGCTGTTCAAACTCGTCACCGGTAAAGAGGGCATGGGCTTTGGCGACTTTAAGCTGCTGGCAGCATTGG
GCGCCTGGCTAGGCTGGAGCTTTTTACCGCTTATCTTGATACTTTCCGCAGGGCTTGGCGCGGTGGTTGGTTTGACTGCT
CAGGCCTGCGCGCCTCGCTTACGTGGCAAACCGCTGCCTTTTGGGCCTTTTCTTGCCCTCGCTGGTTGGGTAGCGTTATT
AGTTGGCGATGAGCTAATGGCGTTGTATCTCAGTCTGCTTATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-238)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	100	0.505
pilD	Vibrio campbellii strain DS40M4	46.263	100	0.463
pilD	Acinetobacter baumannii D1279779	47.426	96.797	0.459
pilD	Acinetobacter nosocomialis M2	47.426	96.797	0.459
pilD	Neisseria gonorrhoeae MS11	43.939	93.95	0.413