Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABOZ73_RS16570 Genome accession   NZ_CP158375
Coordinates   3472814..3473320 (+) Length   168 a.a.
NCBI ID   WP_369059222.1    Uniprot ID   A0AB39KR61
Organism   Caulobacter sp. 73W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3467814..3478320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOZ73_RS16545 (ABOZ73_16545) pseH 3468021..3468575 (+) 555 WP_369059217.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  ABOZ73_RS16550 (ABOZ73_16550) - 3468655..3469017 (+) 363 WP_369059218.1 hypothetical protein -
  ABOZ73_RS16555 (ABOZ73_16555) - 3468980..3471595 (+) 2616 WP_369059219.1 hypothetical protein -
  ABOZ73_RS16560 (ABOZ73_16560) - 3471644..3472297 (+) 654 WP_369059220.1 hypothetical protein -
  ABOZ73_RS16565 (ABOZ73_16565) - 3472307..3472690 (+) 384 WP_369059221.1 hypothetical protein -
  ABOZ73_RS16570 (ABOZ73_16570) ssb 3472814..3473320 (+) 507 WP_369059222.1 single-stranded DNA-binding protein Machinery gene
  ABOZ73_RS16575 (ABOZ73_16575) - 3473578..3475776 (+) 2199 WP_369059223.1 TonB-dependent receptor -
  ABOZ73_RS16580 (ABOZ73_16580) - 3475821..3476735 (+) 915 WP_369059224.1 DMT family transporter -
  ABOZ73_RS16585 (ABOZ73_16585) bioD 3476712..3477371 (-) 660 WP_369059225.1 dethiobiotin synthase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17914.70 Da        Isoelectric Point: 5.3338

>NTDB_id=1011082 ABOZ73_RS16570 WP_369059222.1 3472814..3473320(+) (ssb) [Caulobacter sp. 73W]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSESWRDRTSGERKEKTEWHRVVIFNDNLVKVAENYLRKGSTVYI
EGAIQTRKWTDQSGVEKYSTEIVLQKFRGELTMLGGRGDSSGASAGGGDFDGGYSGGGGGGISGGGQRNQPSGPRENFSA
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1011082 ABOZ73_RS16570 WP_369059222.1 3472814..3473320(+) (ssb) [Caulobacter sp. 73W]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCGGACCCGGAAATCCGCAGCCTCGGTTCGGGCGA
CCGCGTCGCCAACCTGCGCATCGCCACTTCGGAAAGCTGGCGCGACCGCACCTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCACCGGGTCGTGATCTTCAACGACAACCTGGTGAAGGTCGCCGAGAACTATCTGCGCAAGGGATCGACCGTCTACATC
GAGGGCGCCATCCAGACCCGCAAGTGGACCGACCAGAGCGGCGTCGAGAAGTACTCCACTGAAATCGTCCTGCAGAAGTT
CCGCGGCGAGCTGACCATGCTCGGCGGTCGCGGCGACTCCTCGGGCGCCAGCGCCGGCGGCGGTGACTTCGACGGCGGCT
ACAGCGGCGGCGGTGGTGGTGGTATCAGCGGCGGCGGCCAGCGTAACCAGCCCAGCGGTCCGCGAGAGAACTTCTCGGCC
GATCTGGACGACGAAATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.536
  ssb Glaesserella parasuis strain SC1401

44.974

100

0.506
  ssb Neisseria gonorrhoeae MS11

39.891

100

0.435
  ssb Neisseria meningitidis MC58

39.344

100

0.429

Multiple sequence alignment