Detailed information NTG1011059

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABS648_RS19015
• Genome accession: NZ_CP158373
• Coordinates: 4193589..4194809 (-)
• Length: 406 a.a.
• NCBI ID: WP_350446463.1
• Uniprot ID: A0AAU7XZ68
• Organism: Pseudomonas solani strain T3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4188589..4199809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS648_RS19000 (ABS648_18980)	-	4189439..4191394 (+)	1956	WP_350446461.1	acetoacetate--CoA ligase	-
ABS648_RS19005 (ABS648_18985)	-	4191557..4192510 (+)	954	WP_052351453.1	DUF4431 domain-containing protein	-
ABS648_RS19010 (ABS648_18990)	-	4192586..4193344 (+)	759	WP_350446462.1	transporter substrate-binding domain-containing protein	-
ABS648_RS19015 (ABS648_18995)	pilU	4193589..4194809 (-)	1221	WP_350446463.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABS648_RS19020 (ABS648_19000)	-	4194953..4195231 (+)	279	WP_043246830.1	peptidylprolyl isomerase	-
ABS648_RS19025 (ABS648_19005)	-	4195305..4195781 (-)	477	WP_043246832.1	hypothetical protein	-
ABS648_RS19030 (ABS648_19010)	-	4196082..4197671 (+)	1590	WP_031286787.1	ABC-F family ATPase	-
ABS648_RS19035 (ABS648_19015)	-	4197734..4198951 (-)	1218	WP_350446464.1	winged helix-turn-helix domain-containing protein	-
ABS648_RS19040 (ABS648_19020)	-	4198974..4199474 (-)	501	WP_350446465.1	DUF3291 domain-containing protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44777.08 Da
• Isoelectric Point: 6.4285

>NTDB_id=1011059 ABS648_RS19015 WP_350446463.1 4193589..4194809(-) (pilU) [Pseudomonas solani strain T3]
MDLPSMLKVLASQDGSDLYLSTGAPPCAKFNGVLKPLGTDPLKPGDVARIAESIMDPEQRGEFDRELEMNLAISLPNIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLKLPETLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTSDGKRRAAVEVLLGTSTISDLIKRGDFSSIKEIMEKSKALGMQTFDQAL
FDLVIEGSIQEEEAIKNADSANNLRLKLKLHRDGPGTRPTAAAPTPSPAPTPQATPTQDAASWGLELKLEDLPEEDPPPE
DPGKHY

Nucleotide

• Length: 1221 bp

>NTDB_id=1011059 ABS648_RS19015 WP_350446463.1 4193589..4194809(-) (pilU) [Pseudomonas solani strain T3]
ATGGATCTCCCCTCGATGCTCAAGGTTCTGGCCTCCCAGGATGGCTCGGACCTTTACCTTTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTGGGCACCGACCCGCTCAAGCCGGGCGACGTGGCGCGTATCGCCGAATCCA
TCATGGACCCGGAGCAGCGCGGTGAATTCGACCGTGAGCTGGAGATGAACCTGGCCATCTCCCTGCCCAACATCGGGCGG
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTTTCCATCGTCGCGCGCAACATCAAGCTGGACATCCCCAAGTTCGA
AGACCTGAAGCTGCCCGAAACCCTGCTCAAGGTGGTAATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CCGGCAAGTCCACCTCCCTGGCCGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAAGAC
CCGGTGGAATACGTGCACCGGCACAAGAAGTCCATCATCAACCAGCGCGAAGTGGGGGTGGACACCCGCAGCTTCCACGC
CGCCCTGAAGAACACCCTGCGCCAGGCACCGGACGTGATCCTGATCGGCGAGATCCGTGACCGCGAAACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAACGTCGCCCGCAACTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
CCTGGTGCGCACCTCGGACGGCAAGCGCCGCGCGGCGGTGGAAGTGCTGCTGGGCACTTCCACCATCAGCGACCTGATCA
AGCGCGGCGACTTCAGCTCGATCAAGGAAATCATGGAGAAATCCAAGGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGTGATCGAGGGCTCGATCCAGGAAGAGGAGGCGATCAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GCTCAAGCTGCACCGCGACGGCCCCGGTACCCGGCCTACCGCCGCTGCACCGACCCCGTCTCCCGCACCGACGCCCCAGG
CCACGCCAACCCAGGATGCCGCCAGCTGGGGGCTGGAGCTCAAGCTCGAAGACCTGCCCGAAGAAGATCCGCCGCCGGAA
GACCCCGGCAAGCACTACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (110-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	50.86	100	0.51
pilU	Acinetobacter baylyi ADP1	53.125	86.7	0.461
pilU	Vibrio cholerae strain A1552	51.275	86.946	0.446
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.431	91.379	0.369