Detailed information NTG1011055

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABS648_RS10140
• Genome accession: NZ_CP158373
• Coordinates: 2152363..2154585 (+)
• Length: 740 a.a.
• NCBI ID: WP_350448162.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain T3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2147363..2159585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS648_RS10110 (ABS648_10090)	-	2147436..2147729 (-)	294	WP_021219516.1	hypothetical protein	-
ABS648_RS10115 (ABS648_10095)	-	2147735..2148322 (-)	588	WP_021219515.1	PilZ domain-containing protein	-
ABS648_RS10120 (ABS648_10100)	-	2148418..2149668 (+)	1251	WP_021219514.1	lipoprotein-releasing ABC transporter permease subunit	-
ABS648_RS10125 (ABS648_10105)	lolD	2149670..2150353 (+)	684	WP_162164733.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
ABS648_RS10130 (ABS648_10110)	-	2150355..2151599 (+)	1245	WP_316925227.1	lipoprotein-releasing ABC transporter permease subunit	-
ABS648_RS10135 (ABS648_10115)	-	2151682..2152212 (-)	531	WP_021219511.1	DUF2062 domain-containing protein	-
ABS648_RS10140 (ABS648_10120)	comA	2152363..2154585 (+)	2223	WP_350448162.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABS648_RS10145 (ABS648_10125)	exbB	2154658..2155293 (+)	636	WP_031287691.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABS648_RS10150 (ABS648_10130)	-	2155290..2155730 (+)	441	WP_021219508.1	biopolymer transporter ExbD	-
ABS648_RS10155 (ABS648_10135)	lpxK	2155730..2156734 (+)	1005	WP_043244265.1	tetraacyldisaccharide 4'-kinase	-
ABS648_RS10160 (ABS648_10140)	-	2156776..2156961 (+)	186	WP_021219506.1	Trm112 family protein	-
ABS648_RS10165 (ABS648_10145)	kdsB	2156961..2157725 (+)	765	WP_021219505.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABS648_RS10170 (ABS648_10150)	-	2157725..2158183 (+)	459	WP_043244270.1	low molecular weight protein-tyrosine-phosphatase	-
ABS648_RS10175 (ABS648_10155)	murB	2158180..2159199 (+)	1020	WP_350448164.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79201.66 Da
• Isoelectric Point: 10.3590

>NTDB_id=1011055 ABS648_RS10140 WP_350448162.1 2152363..2154585(+) (comA) [Pseudomonas solani strain T3]
MTGRLVALACGLASLRFMPGLPTGGWLLAAAVLGGVLLFTRLRLPGLFLLGGAWACFFAQQALDDRLAMALDGETRWLQG
QVVGLPQRGGGVVRFELEDAVAPGLRLPQRMRLSWYGGPEVRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHTGATG
SVKAGEPLQRGSGPAAWRDRVRQGIESVPAHGRNGGIAALVLGDGSGIDSADWQLLLNTGTVHLMVISGQHIALLAAVLY
GAVALLARLGIWPRRLPWLPCACALAFVGSLGYGLLAGFDVPVQRSCLMTAIALLWRLRFRHLGVLRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLVLIFAGRLGVPPWWRSWWRAQWTMGLALSPLLLAMALPISLSGPLANLIAVPWVSLVSVPL
SLLGAALQGVPGLGAGLLWLAGGSLELLFRLLGWIAEWIPAWQATAVPVWAWLLGMLGCLLLIVPAGMPVRALGLALLLP
TLFPPVERPAWGRADIWLLDVGQGLSVLVRTREHALLYDAGARRGDFDMGERVVLPSLLGLGVRRLDQMLLSHADNDHAG
GAGAVMRGMPVARVVSGEPERLPASLGAEACRDQAWEWDGVRLRTWHWDAARTGNDRSCVLSVEARGERIHLTGDIGAQA
EAAWIASGEPLPADWLLAPHHGSASSSSAALIGAVAPRGALITRGSHNAFGHPHSTVIARYRAAGAAIHDTAESGALLIR
LGERDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=1011055 ABS648_RS10140 WP_350448162.1 2152363..2154585(+) (comA) [Pseudomonas solani strain T3]
ATGACGGGGAGGTTGGTTGCGCTGGCCTGCGGGTTGGCCTCGCTGCGTTTCATGCCGGGGTTGCCGACGGGCGGCTGGCT
TCTGGCGGCGGCGGTGCTGGGCGGCGTTCTTCTATTCACACGGCTACGGCTGCCGGGGCTGTTCCTCCTGGGCGGCGCCT
GGGCCTGCTTCTTTGCCCAGCAGGCCCTGGATGATCGCCTGGCCATGGCCCTGGATGGCGAGACTCGCTGGCTGCAAGGG
CAGGTTGTCGGCCTGCCGCAGCGGGGCGGTGGGGTGGTGCGTTTCGAGTTGGAGGATGCCGTCGCCCCCGGATTGCGCTT
GCCGCAGCGCATGCGCCTGTCCTGGTATGGCGGGCCCGAGGTGCGCGGGGGCGAGCGTTGGCGCCTGGCGGTGACCCTGA
AGCGCCCCCGGGGCCTGGTGAACCCTCACGCGTTCGACTACGAAGCCTGGCTGCTGGCCCGCCATACCGGCGCCACCGGC
TCGGTGAAGGCGGGCGAGCCGTTGCAACGGGGCAGTGGCCCGGCTGCCTGGCGTGACCGCGTGCGCCAGGGCATAGAAAG
TGTGCCCGCCCATGGTCGCAACGGCGGTATCGCCGCGCTGGTGCTGGGAGATGGCTCGGGGATCGACAGTGCCGATTGGC
AGTTGCTGCTGAACACCGGGACGGTGCACCTGATGGTGATTTCCGGCCAGCACATTGCCTTGCTCGCGGCGGTGCTGTAC
GGAGCTGTGGCGTTGCTGGCCCGGCTCGGCATTTGGCCCCGACGCCTGCCGTGGTTGCCTTGTGCCTGTGCGCTGGCCTT
CGTCGGCTCGCTGGGTTACGGACTCCTCGCCGGCTTCGACGTGCCGGTGCAGCGCTCCTGCCTGATGACCGCCATCGCGC
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGTGCTGCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCCGAT
CCGCTGGCGTCCCTGCAGGCGGGGTTCTGGCTGTCCTTCGGGGCCGTGGCATTGCTGGTGCTGATCTTCGCCGGGCGCCT
GGGCGTGCCGCCCTGGTGGCGCAGTTGGTGGCGCGCGCAATGGACCATGGGCCTGGCGCTGTCGCCCTTGCTGCTGGCCA
TGGCCCTGCCCATCAGCCTGAGCGGCCCGCTGGCCAACCTGATTGCGGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTG
TCTTTATTAGGCGCGGCCCTGCAGGGTGTGCCGGGTCTTGGGGCGGGGCTGCTGTGGTTGGCGGGTGGGTCGCTGGAACT
GTTGTTCCGCTTGCTGGGCTGGATAGCGGAATGGATTCCCGCCTGGCAGGCGACCGCCGTTCCCGTCTGGGCCTGGCTGC
TGGGCATGCTCGGTTGCCTGCTGCTGATCGTGCCGGCCGGGATGCCGGTGCGGGCTTTGGGGTTGGCGTTGTTGTTGCCA
ACGCTGTTTCCGCCGGTGGAGCGCCCGGCCTGGGGGAGGGCGGATATCTGGTTGCTGGATGTGGGGCAGGGGCTGTCGGT
GCTGGTGCGCACGCGGGAGCACGCGCTGCTCTACGACGCTGGCGCGCGGCGGGGCGATTTCGACATGGGCGAGCGCGTGG
TGCTGCCCAGCCTGCTGGGGCTGGGTGTGCGGCGCCTGGACCAGATGCTCCTCAGCCATGCCGACAACGACCACGCGGGT
GGCGCCGGTGCCGTGATGCGTGGCATGCCGGTGGCACGGGTGGTGAGCGGCGAGCCGGAGCGCCTGCCGGCCAGCCTGGG
GGCCGAGGCCTGCCGTGACCAGGCCTGGGAATGGGACGGCGTGCGCCTGCGGACCTGGCACTGGGACGCTGCGCGCACGG
GCAACGACCGCTCCTGCGTGCTCAGTGTGGAGGCGCGGGGCGAGCGCATTCACTTGACCGGCGATATCGGCGCCCAGGCC
GAAGCCGCCTGGATCGCCAGTGGTGAACCCTTGCCCGCCGATTGGCTGCTGGCACCTCACCATGGCAGCGCCAGCTCTTC
ATCGGCGGCGCTCATTGGCGCGGTGGCTCCCCGTGGTGCGCTGATCACCCGGGGCAGCCACAACGCTTTCGGCCATCCAC
ACTCAACCGTGATCGCCCGTTACCGGGCGGCGGGCGCTGCAATCCACGACACGGCGGAGTCCGGTGCACTGCTGATCCGC
CTTGGTGAACGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-682)

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.028	97.297	0.623
comA	Ralstonia pseudosolanacearum GMI1000	35.76	100	0.378