Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABS648_RS10145 Genome accession   NZ_CP158373
Coordinates   2154658..2155293 (+) Length   211 a.a.
NCBI ID   WP_031287691.1    Uniprot ID   A0AAU7Y816
Organism   Pseudomonas solani strain T3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2149658..2160293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS10125 (ABS648_10105) lolD 2149670..2150353 (+) 684 WP_162164733.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABS648_RS10130 (ABS648_10110) - 2150355..2151599 (+) 1245 WP_316925227.1 lipoprotein-releasing ABC transporter permease subunit -
  ABS648_RS10135 (ABS648_10115) - 2151682..2152212 (-) 531 WP_021219511.1 DUF2062 domain-containing protein -
  ABS648_RS10140 (ABS648_10120) comA 2152363..2154585 (+) 2223 WP_350448162.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABS648_RS10145 (ABS648_10125) exbB 2154658..2155293 (+) 636 WP_031287691.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABS648_RS10150 (ABS648_10130) - 2155290..2155730 (+) 441 WP_021219508.1 biopolymer transporter ExbD -
  ABS648_RS10155 (ABS648_10135) lpxK 2155730..2156734 (+) 1005 WP_043244265.1 tetraacyldisaccharide 4'-kinase -
  ABS648_RS10160 (ABS648_10140) - 2156776..2156961 (+) 186 WP_021219506.1 Trm112 family protein -
  ABS648_RS10165 (ABS648_10145) kdsB 2156961..2157725 (+) 765 WP_021219505.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABS648_RS10170 (ABS648_10150) - 2157725..2158183 (+) 459 WP_043244270.1 low molecular weight protein-tyrosine-phosphatase -
  ABS648_RS10175 (ABS648_10155) murB 2158180..2159199 (+) 1020 WP_350448164.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.09 Da        Isoelectric Point: 6.7295

>NTDB_id=1011056 ABS648_RS10145 WP_031287691.1 2154658..2155293(+) (exbB) [Pseudomonas solani strain T3]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLVVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1011056 ABS648_RS10145 WP_031287691.1 2154658..2155293(+) (exbB) [Pseudomonas solani strain T3]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATTATCGT
GGAGCGCCTGTGGACGCTTCGCGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCCCAGAAGCTCAAGGAGCTGCGTGCGTCTTCCCCGCTGGGTGAGATCCTCGCGGCGGGCCTAGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCTTCCCGCGTCATCCACGAACTGGAGCGCTACCT
CAACACCCTGGGCACCATCGCCGCGATGGGCCCGCTGTTGGGCCTGCTGGGCACCGTGTTCGGCATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCCAACGCCCCGGCACTGGCTGGCGGTATCGGCAAGGCACTGATTACCACTGCAGCT
GGCCTGGTGGTCGCTATCCCTGCGGTGTTCTTCCATCGTTTCCTGCTGCGTCGCGTCGACGAACTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGCGATCGTGAAGTGGACTTCGCAGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment