Detailed information NTG1011048

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABS648_RS06090
• Genome accession: NZ_CP158373
• Coordinates: 1267418..1268752 (-)
• Length: 444 a.a.
• NCBI ID: WP_021219360.1
• Uniprot ID: A0AAU7Y6G6
• Organism: Pseudomonas solani strain T3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1262418..1273752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS648_RS06055 (ABS648_06040)	-	1262844..1263188 (-)	345	WP_350447858.1	hypothetical protein	-
ABS648_RS06060 (ABS648_06045)	-	1263204..1263746 (-)	543	WP_043243734.1	PilX N-terminal domain-containing pilus assembly protein	-
ABS648_RS06065 (ABS648_06050)	-	1263756..1264565 (-)	810	WP_350447859.1	PilW family protein	-
ABS648_RS06070 (ABS648_06055)	pilV	1264562..1265137 (-)	576	WP_350447860.1	type IV pilus modification protein PilV	-
ABS648_RS06075 (ABS648_06060)	-	1265124..1265642 (-)	519	WP_350447861.1	GspH/FimT family pseudopilin	-
ABS648_RS06080 (ABS648_06065)	-	1265756..1266265 (-)	510	WP_350447862.1	GspH/FimT family protein	-
ABS648_RS06085 (ABS648_06070)	thiO	1266308..1267405 (+)	1098	WP_350447863.1	glycine oxidase ThiO	-
ABS648_RS06090 (ABS648_06075)	pilR	1267418..1268752 (-)	1335	WP_021219360.1	sigma-54 dependent transcriptional regulator	Regulator
ABS648_RS06095 (ABS648_06080)	pilS	1268755..1270347 (-)	1593	WP_021219359.1	ATP-binding protein	Regulator
ABS648_RS06100 (ABS648_06085)	-	1270337..1270573 (-)	237	WP_350447864.1	PP0621 family protein	-
ABS648_RS06105 (ABS648_06090)	-	1270756..1271775 (-)	1020	WP_021219357.1	outer membrane protein assembly factor BamD	-
ABS648_RS06110 (ABS648_06095)	rluD	1271936..1272895 (+)	960	WP_162164730.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ABS648_RS06115 (ABS648_06100)	pgeF	1272895..1273620 (+)	726	WP_350447865.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49586.77 Da
• Isoelectric Point: 5.4271

>NTDB_id=1011048 ABS648_RS06090 WP_021219360.1 1267418..1268752(-) (pilR) [Pseudomonas solani strain T3]
MTRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSSNGDTPMDNRLLGDSPPMKSLRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCENDQIQPEDLRLTDAPAASENGEADLAQIDNLEDY
LEEVERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1335 bp

>NTDB_id=1011048 ABS648_RS06090 WP_021219360.1 1267418..1268752(-) (pilR) [Pseudomonas solani strain T3]
ATGACCAGACAGAAAGCACTCATCGTCGATGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAACGTGAAAGAGGCCCGCGAGCTCCTGGCCGCCGAACCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTCGTTCAGCACATCCAGCAACGCCACCCCCAAGTGCCCGTTGCCATG
ATTACCGCCTACGGCAGCCTGGACACGGCCGTCAACGCCCTGAAAGCCGGCGCCTTCGACTTTCTTACCAAACCGGTGGA
CCTCGGCCGGCTTCGCGAGCTGGTGGCTGCGGCCTTGCGCCTGCGCACCAGCAGCAACGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCCCCGCCGATGAAGTCTCTGCGTAACCAGATCCAGAAGCTCGCCCGCAGCCAGGCCCCCGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCATGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCCGCCCACGGCGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTCCGCACCATCGGCGGACAGCAGGAAGTGGTAGT
GGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCAGAAGTGGCTGCTGGACGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGCGTCCCGCCGCTGCGCGAGCGCCGCGAAGACATCCCGCAACTGGCCGACGTCATG
CTCAAGCGCCTGGCAGCGGACAGCAGCGCTGCGGCCAGCATCACCCGCGATGCGATGGAGAAGCTCAAGAGCTACCGCTT
CCCCGGCAACGTCCGCGAACTGGAGAACATGCTGGAACGGGCCTACACGCTGTGTGAGAACGACCAGATCCAGCCCGAGG
ACCTGCGCCTGACGGATGCACCGGCGGCTTCCGAAAACGGCGAAGCCGACCTCGCGCAAATCGACAATCTCGAGGACTAC
CTGGAAGAGGTGGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGTACCGCCGCCGCCCAGCGCCT
GGGCCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.742	100	0.869
pilR	Acinetobacter baumannii strain A118	49.783	100	0.516
luxO	Vibrio cholerae strain A1552	37.104	99.55	0.369