Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABS648_RS06095 Genome accession   NZ_CP158373
Coordinates   1268755..1270347 (-) Length   530 a.a.
NCBI ID   WP_021219359.1    Uniprot ID   A0AAU7Y5U8
Organism   Pseudomonas solani strain T3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263755..1275347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS06065 (ABS648_06050) - 1263756..1264565 (-) 810 WP_350447859.1 PilW family protein -
  ABS648_RS06070 (ABS648_06055) pilV 1264562..1265137 (-) 576 WP_350447860.1 type IV pilus modification protein PilV -
  ABS648_RS06075 (ABS648_06060) - 1265124..1265642 (-) 519 WP_350447861.1 GspH/FimT family pseudopilin -
  ABS648_RS06080 (ABS648_06065) - 1265756..1266265 (-) 510 WP_350447862.1 GspH/FimT family protein -
  ABS648_RS06085 (ABS648_06070) thiO 1266308..1267405 (+) 1098 WP_350447863.1 glycine oxidase ThiO -
  ABS648_RS06090 (ABS648_06075) pilR 1267418..1268752 (-) 1335 WP_021219360.1 sigma-54 dependent transcriptional regulator Regulator
  ABS648_RS06095 (ABS648_06080) pilS 1268755..1270347 (-) 1593 WP_021219359.1 ATP-binding protein Regulator
  ABS648_RS06100 (ABS648_06085) - 1270337..1270573 (-) 237 WP_350447864.1 PP0621 family protein -
  ABS648_RS06105 (ABS648_06090) - 1270756..1271775 (-) 1020 WP_021219357.1 outer membrane protein assembly factor BamD -
  ABS648_RS06110 (ABS648_06095) rluD 1271936..1272895 (+) 960 WP_162164730.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABS648_RS06115 (ABS648_06100) pgeF 1272895..1273620 (+) 726 WP_350447865.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58629.90 Da        Isoelectric Point: 8.5806

>NTDB_id=1011049 ABS648_RS06095 WP_021219359.1 1268755..1270347(-) (pilS) [Pseudomonas solani strain T3]
MSAEAPALGSQPARRIFRLYNIYRLLIGLALVGLISSELDSELLDLARAQLFRNACWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVAAIGMIYLTFYLSLSRPEAASQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDPQHRVILANQGALTLLGREDLAGKVLD
PQSPELVKRLQQWLDNPTLRPQSLQAVAEGPVLQPSFVSLQRGEQRDTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELSGPDQRLAQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSSQKNKVGQVWLKLFRDPESDLPVLEVMDDGAGVPAEQVQHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1011049 ABS648_RS06095 WP_021219359.1 1268755..1270347(-) (pilS) [Pseudomonas solani strain T3]
GTGAGCGCTGAAGCCCCCGCGCTGGGCAGCCAGCCGGCACGCCGCATCTTCCGCCTCTACAACATCTACCGCCTGCTCAT
CGGCCTGGCACTGGTGGGCCTGATCTCCAGCGAGCTGGACAGCGAACTGCTCGACCTGGCCCGCGCCCAGCTGTTCCGCA
ATGCCTGCTGGTTCTACCTGCTGCTGAACATCCTCATCGCGCTGATGGTCCGCCATCCGAAACACATGCTGCAGGTCTTC
AGCCTGGCGCTGGTGGACGTGATCCTGCTGTCCTGCCTGTTCTATGCGGCGGGCGGCACGCCGAGCGGTATCGGCAACCT
GGTGATAGTTGCGGTGGCGATCGCCAACATCCTGCTGCGCGGCCGGGTCGGCTTGCTGATCGCCGCCGTCGCCGCCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGAAGCCGCCAGCCAGTACGTGCAGGCCGGCGCCCTGGGT
GCCTTGTGCTTCGCCGCCGCCCTCTTCGTCCAGGGCATCAGCAAGCGCCTGCAACTGAGCGAGACCCTGGCCGAAAAACG
TGCCGCCGACGTCGCCAACCTGGAAGCGCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTCGACC
CCCAGCACCGCGTAATCCTGGCCAACCAGGGTGCGCTGACGCTGCTGGGCCGCGAGGACCTGGCCGGCAAGGTCCTCGAC
CCGCAAAGCCCGGAGCTGGTGAAACGCCTTCAGCAGTGGCTGGACAACCCCACGCTGCGTCCCCAGAGCCTGCAGGCGGT
GGCCGAAGGCCCGGTGCTGCAACCGAGCTTCGTCTCCCTGCAGCGGGGCGAGCAGCGGGACACCCTGATCTTCCTCGACG
ACATCTCGCAGATCGCCCAACAGGCCCAGCAACTCAAGCTCGCCTCCCTGGGTCGCCTGACCGCCGGCATCGCCCACGAG
ATACGCAACCCACTGGGCGCCATCAGCCACGCGGCGCAGTTGCTGCAGGAGTCCGAGGAGCTGTCCGGTCCCGACCAGCG
CCTGGCGCAGATCATCCAGGACCAGTCGCGGCGTATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCCCGCCGCCGCC
AAGCGGAGCCGCAATTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAACGCATCCGGCCCGGGC
CAGACGCTGCACATCGAGACCAACAGCGGCACCATCCAGACCCGCATGGACCCGCACCAACTCACCCAGGTACTGACCAA
CCTGGTACAGAACGGCCTGCGCTACAGTTCACAGAAGAACAAGGTAGGACAGGTCTGGCTGAAGCTGTTCCGCGACCCGG
AAAGCGACCTGCCCGTTCTGGAAGTGATGGATGACGGCGCCGGCGTACCCGCCGAGCAGGTGCAGCACATCTTCGAGCCC
TTCTACACCACCGAAAACAAGGGCACCGGGCTTGGCCTGTACATCTCACGGGAGCTGTGCGAGAGCAACCAGGCCCGTCT
CGACTACAGGCCCCGCGAAACCGGAGGCAGCTGCTTTCGCATAACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.849

100

0.658

Multiple sequence alignment