Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABS648_RS03900 Genome accession   NZ_CP158373
Coordinates   813587..814084 (+) Length   165 a.a.
NCBI ID   WP_021219615.1    Uniprot ID   -
Organism   Pseudomonas solani strain T3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 808587..819084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS03890 (ABS648_03875) uvrA 809139..811973 (-) 2835 WP_350447646.1 excinuclease ABC subunit UvrA -
  ABS648_RS03895 (ABS648_03880) - 812183..813577 (+) 1395 WP_021219614.1 MFS transporter -
  ABS648_RS03900 (ABS648_03885) ssb 813587..814084 (+) 498 WP_021219615.1 single-stranded DNA-binding protein Machinery gene
  ABS648_RS03905 (ABS648_03890) - 814217..815494 (+) 1278 WP_350447647.1 site-specific integrase -
  ABS648_RS03910 (ABS648_03895) - 815487..817037 (+) 1551 WP_350447648.1 site-specific integrase -
  ABS648_RS03915 (ABS648_03900) - 817030..819081 (+) 2052 WP_350447649.1 integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18463.46 Da        Isoelectric Point: 5.3338

>NTDB_id=1011046 ABS648_RS03900 WP_021219615.1 813587..814084(+) (ssb) [Pseudomonas solani strain T3]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GTLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGNDGDSAPRAPRPQREPQQSAPREQQQRPAPQPAAQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1011046 ABS648_RS03900 WP_021219615.1 813587..814084(+) (ssb) [Pseudomonas solani strain T3]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGATCCCGAAGTTCGCTACATGCCCAACGGCAA
TGCCGTGACCAACGTCACCCTGGCCACCAGCGAAAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGTCTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTACGTCGAA
GGCACCCTGCGCACCCGCGAGTGGGAAAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTCGACATCAACGGCCA
GATGCAGCTGCTCGGCGGCCGTCCCGGCAACGATGGCGATTCCGCTCCGCGTGCCCCGCGCCCGCAGCGTGAGCCGCAAC
AGTCCGCCCCGCGCGAGCAACAGCAGCGCCCGGCTCCGCAGCCCGCCGCCCAACCGGCGCCGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.612
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.552
  ssb Neisseria meningitidis MC58

45.81

100

0.497
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.497

Multiple sequence alignment