Detailed information NTG1011043

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABS648_RS02105
• Genome accession: NZ_CP158373
• Coordinates: 438342..439487 (+)
• Length: 381 a.a.
• NCBI ID: WP_021218362.1
• Uniprot ID: A0AAU7Y6D2
• Organism: Pseudomonas solani strain T3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 433342..444487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS648_RS02080 (ABS648_02080)	-	433606..434199 (-)	594	WP_265170282.1	YggT family protein	-
ABS648_RS02085 (ABS648_02085)	-	434362..435576 (-)	1215	WP_350447501.1	hypothetical protein	-
ABS648_RS02090 (ABS648_02090)	proC	435582..436400 (-)	819	WP_021218359.1	pyrroline-5-carboxylate reductase	-
ABS648_RS02095 (ABS648_02095)	-	436414..437109 (-)	696	WP_350447502.1	YggS family pyridoxal phosphate-dependent enzyme	-
ABS648_RS02100 (ABS648_02100)	pilT	437178..438212 (+)	1035	WP_021218361.1	type IV pilus twitching motility protein PilT	Machinery gene
ABS648_RS02105 (ABS648_02105)	pilU	438342..439487 (+)	1146	WP_021218362.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABS648_RS02110 (ABS648_02110)	-	439420..440913 (-)	1494	WP_350447503.1	UdgX family uracil-DNA binding protein	-
ABS648_RS02115 (ABS648_02115)	-	440913..442127 (-)	1215	WP_263401653.1	putative DNA modification/repair radical SAM protein	-
ABS648_RS02120 (ABS648_02120)	-	442229..442624 (+)	396	WP_350447504.1	TM2 domain-containing protein	-
ABS648_RS02125 (ABS648_02125)	-	442684..443955 (-)	1272	WP_350447505.1	dihydroorotase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42463.75 Da
• Isoelectric Point: 6.5931

>NTDB_id=1011043 ABS648_RS02105 WP_021218362.1 438342..439487(+) (pilU) [Pseudomonas solani strain T3]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNAMSPEQTRETVLAVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLDDLKLPEILKKLALTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQSCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYTLYSQGEITYEDALLYADSANDLRLMIKLGSETDGDHLTSMSGGLSLEVSEEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=1011043 ABS648_RS02105 WP_021218362.1 438342..439487(+) (pilU) [Pseudomonas solani strain T3]
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTCCCCCCGTC
GATGAAGGTCAACGGCAAGATCATGCCCGTGACCAAGAACGCCATGTCCCCGGAGCAGACCCGTGAAACCGTGCTCGCGG
TGATGAACGAGCAGCAGCGCCGTGACTTCGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGGGGCATCGGCCGC
TTCCGCGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATCCCCACCCTGGA
TGACCTCAAGCTGCCGGAAATCCTCAAGAAGCTGGCACTGACCAAGCGCGGCCTGGTGCTCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACTTCCCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAGTACATCCACCAGCACCAGAGCTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCGAGTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGTGAGGTGCGGACCCGCGAAACCATGGACCATG
CCGTGGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCTGCCGACCGTCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGCCGCCGCGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACACCCTTTACTCCCAGGGCGAGATCACCTACGAAGACGCGCTGCTCTACGCCGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAAACCGACGGCGACCACCTCACGAGCATGAGCGGTGGCCTGTCGCTGGAAGTGTCCGAGG
AAGACCCGGGCCGTCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (110-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	91.339	100	0.913
pilU	Acinetobacter baylyi ADP1	64.426	93.701	0.604
pilU	Vibrio cholerae strain A1552	58.857	91.864	0.541
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.155	88.189	0.381