Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLUC023_RS12010 Genome accession   NZ_CP158368
Coordinates   2336952..2337452 (-) Length   166 a.a.
NCBI ID   WP_011677241.1    Uniprot ID   A0A0M2ZSZ2
Organism   Lactococcus cremoris strain UC023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2336952..2359320 2336952..2337452 within 0


Gene organization within MGE regions


Location: 2336952..2359320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC023_RS12010 (LLUC023_12015) ssb 2336952..2337452 (-) 501 WP_011677241.1 single-stranded DNA-binding protein Machinery gene
  LLUC023_RS12015 (LLUC023_12020) rpsF 2337482..2337775 (-) 294 WP_011677242.1 30S ribosomal protein S6 -
  LLUC023_RS12020 (LLUC023_12025) - 2337969..2338823 (-) 855 WP_011677243.1 undecaprenyl-diphosphate phosphatase -
  LLUC023_RS12025 (LLUC023_12030) - 2339345..2340811 (+) 1467 WP_011677244.1 amino acid permease -
  LLUC023_RS12030 (LLUC023_12035) dnaX 2340845..2342506 (-) 1662 WP_396419917.1 DNA polymerase III subunit gamma/tau -
  LLUC023_RS12035 (LLUC023_12040) - 2342552..2343193 (-) 642 WP_011677246.1 phosphotransferase -
  LLUC023_RS12040 (LLUC023_12045) - 2343225..2343713 (-) 489 WP_011677247.1 GAF domain-containing protein -
  LLUC023_RS12045 (LLUC023_12050) - 2343797..2344069 (+) 273 WP_011677248.1 chorismate mutase -
  LLUC023_RS12050 (LLUC023_12055) - 2344103..2344552 (-) 450 WP_011677249.1 hypothetical protein -
  LLUC023_RS12055 (LLUC023_12060) - 2344842..2346026 (-) 1185 WP_396419919.1 tyrosine-type recombinase/integrase -
  LLUC023_RS12060 (LLUC023_12065) - 2346423..2347640 (-) 1218 WP_396419921.1 restriction endonuclease subunit S -
  LLUC023_RS12065 (LLUC023_12070) - 2347753..2348079 (-) 327 WP_021212069.1 hypothetical protein -
  LLUC023_RS12070 (LLUC023_12075) - 2348660..2349142 (-) 483 WP_396419923.1 helix-turn-helix domain-containing protein -
  LLUC023_RS12075 (LLUC023_12080) - 2349287..2349478 (+) 192 WP_196498109.1 helix-turn-helix domain-containing protein -
  LLUC023_RS12080 (LLUC023_12085) - 2349654..2350349 (+) 696 WP_282675623.1 Rha family transcriptional regulator -
  LLUC023_RS12085 (LLUC023_12090) - 2350944..2351165 (+) 222 WP_081172377.1 hypothetical protein -
  LLUC023_RS12090 (LLUC023_12095) - 2351355..2351507 (+) 153 WP_021216187.1 hypothetical protein -
  LLUC023_RS12095 (LLUC023_12100) - 2351504..2351785 (+) 282 WP_011677053.1 hypothetical protein -
  LLUC023_RS12100 (LLUC023_12105) istA 2351935..2353158 (+) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  LLUC023_RS12105 (LLUC023_12110) istB 2353170..2353928 (+) 759 WP_003331414.1 IS21-like element IS712 family helper ATPase IstB -
  LLUC023_RS12110 (LLUC023_12115) - 2354044..2354229 (+) 186 WP_396419928.1 hypothetical protein -
  LLUC023_RS12115 (LLUC023_12120) - 2354226..2354480 (+) 255 WP_396419930.1 hypothetical protein -
  LLUC023_RS12120 (LLUC023_12125) - 2354477..2354671 (+) 195 WP_098404896.1 hypothetical protein -
  LLUC023_RS12125 (LLUC023_12130) - 2354658..2354984 (+) 327 WP_023163797.1 hypothetical protein -
  LLUC023_RS12130 (LLUC023_12135) - 2354997..2355791 (+) 795 WP_396419933.1 bifunctional DNA primase/polymerase -
  LLUC023_RS12135 (LLUC023_12140) - 2355802..2357436 (+) 1635 WP_396419935.1 phage/plasmid primase, P4 family -
  LLUC023_RS12140 (LLUC023_12145) - 2357651..2357917 (+) 267 WP_282675568.1 hypothetical protein -
  LLUC023_RS12145 (LLUC023_12150) - 2358018..2358593 (+) 576 WP_205288183.1 hypothetical protein -
  LLUC023_RS12150 (LLUC023_12155) - 2358608..2358970 (+) 363 WP_205288184.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18233.05 Da        Isoelectric Point: 5.2166

>NTDB_id=1011037 LLUC023_RS12010 WP_011677241.1 2336952..2337452(-) (ssb) [Lactococcus cremoris strain UC023]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1011037 LLUC023_RS12010 WP_011677241.1 2336952..2337452(-) (ssb) [Lactococcus cremoris strain UC023]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZSZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361

Multiple sequence alignment