Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H1W90_RS03875 Genome accession   NZ_LR822033
Coordinates   742893..743540 (-) Length   215 a.a.
NCBI ID   WP_022096799.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 737893..748540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS03860 (STHERMO_0838) holA 739642..740676 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  H1W90_RS03865 (STHERMO_0839) sodA 740771..741376 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  H1W90_RS03870 (STHERMO_0840) - 741474..742853 (+) 1380 WP_180481276.1 serine hydrolase -
  H1W90_RS03875 (STHERMO_0841) cclA/cilC 742893..743540 (-) 648 WP_022096799.1 prepilin peptidase Machinery gene
  H1W90_RS03880 (STHERMO_0842) - 743649..744170 (+) 522 WP_180481277.1 Dps family protein -
  H1W90_RS03885 (STHERMO_0843) - 744259..744696 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  H1W90_RS03890 (STHERMO_0844) - 744807..745013 (+) 207 WP_002950395.1 YqgQ family protein -
  H1W90_RS03895 (STHERMO_0845) - 745006..745974 (+) 969 WP_011225772.1 ROK family glucokinase -
  H1W90_RS03900 (STHERMO_0846) typA 746112..747959 (+) 1848 WP_011227074.1 translational GTPase TypA -
  H1W90_RS03905 (STHERMO_0847) - 747983..748255 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.95 Da        Isoelectric Point: 8.2133

>NTDB_id=1010925 H1W90_RS03875 WP_022096799.1 742893..743540(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1048]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1010925 H1W90_RS03875 WP_022096799.1 742893..743540(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACATTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381

Multiple sequence alignment