Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABR329_RS09100 Genome accession   NZ_CP158364
Coordinates   2117745..2119574 (-) Length   609 a.a.
NCBI ID   WP_115796559.1    Uniprot ID   -
Organism   Bifidobacterium longum strain PMC72     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112745..2124574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR329_RS09075 (ABR329_09075) - 2113379..2113606 (+) 228 WP_015512101.1 hypothetical protein -
  ABR329_RS09080 (ABR329_09080) rsmI 2113633..2114643 (-) 1011 WP_032746934.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABR329_RS09090 (ABR329_09090) - 2115047..2116465 (-) 1419 WP_117839457.1 MFS transporter -
  ABR329_RS09095 (ABR329_09095) - 2116547..2117593 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  ABR329_RS09100 (ABR329_09100) rcrQ 2117745..2119574 (-) 1830 WP_115796559.1 ABC transporter ATP-binding protein Regulator
  ABR329_RS09105 (ABR329_09105) rcrP 2119788..2121659 (-) 1872 WP_011068647.1 ABC transporter ATP-binding protein Regulator
  ABR329_RS09110 (ABR329_09110) - 2121911..2122441 (-) 531 WP_011068645.1 MarR family transcriptional regulator -
  ABR329_RS09115 (ABR329_09115) - 2122803..2123366 (+) 564 WP_007055052.1 BRO family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66687.01 Da        Isoelectric Point: 5.9522

>NTDB_id=1010925 ABR329_RS09100 WP_115796559.1 2117745..2119574(-) (rcrQ) [Bifidobacterium longum strain PMC72]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1010925 ABR329_RS09100 WP_115796559.1 2117745..2119574(-) (rcrQ) [Bifidobacterium longum strain PMC72]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
CGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTCACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CATCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAGCTGCTGGCGGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.359

96.059

0.522

Multiple sequence alignment