Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H1W74_RS03540 Genome accession   NZ_LR822031
Coordinates   672143..672790 (-) Length   215 a.a.
NCBI ID   WP_022096799.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 667143..677790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS03525 (STHERMO_0764) holA 668892..669926 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  H1W74_RS03530 (STHERMO_0765) sodA 670021..670626 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  H1W74_RS03535 (STHERMO_0766) - 670724..672103 (+) 1380 WP_011225767.1 serine hydrolase -
  H1W74_RS03540 (STHERMO_0767) cclA/cilC 672143..672790 (-) 648 WP_022096799.1 prepilin peptidase Machinery gene
  H1W74_RS03545 (STHERMO_0768) - 672899..673420 (+) 522 WP_011225768.1 Dps family protein -
  H1W74_RS03550 (STHERMO_0769) - 673509..673946 (+) 438 WP_022096800.1 Fur family transcriptional regulator -
  H1W74_RS03555 (STHERMO_0770) - 674057..674263 (+) 207 WP_022096801.1 YqgQ family protein -
  H1W74_RS03560 (STHERMO_0771) - 674256..675224 (+) 969 WP_022096802.1 ROK family glucokinase -
  H1W74_RS03565 (STHERMO_0772) typA 675362..677209 (+) 1848 WP_180473184.1 translational GTPase TypA -
  H1W74_RS03570 (STHERMO_0773) - 677233..677505 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.95 Da        Isoelectric Point: 8.2133

>NTDB_id=1010711 H1W74_RS03540 WP_022096799.1 672143..672790(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1047]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1010711 H1W74_RS03540 WP_022096799.1 672143..672790(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACATTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381