Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H1W74_RS01825 Genome accession   NZ_LR822031
Coordinates   339843..340505 (+) Length   220 a.a.
NCBI ID   WP_002949747.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334843..345505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS01800 (STHERMO_0385) - 335163..335873 (+) 711 WP_002947183.1 ABC transporter ATP-binding protein -
  H1W74_RS01805 (STHERMO_0386) - 336009..336667 (+) 659 Protein_317 CBS domain-containing protein -
  H1W74_RS01810 (STHERMO_0388) cysK 336834..337760 (-) 927 WP_002947179.1 cysteine synthase A -
  H1W74_RS01815 (STHERMO_0389) - 337862..338488 (-) 627 WP_002947177.1 YigZ family protein -
  H1W74_RS01820 (STHERMO_0390) comFA/cflA 338543..339862 (+) 1320 WP_022096634.1 DEAD/DEAH box helicase Machinery gene
  H1W74_RS01825 (STHERMO_0391) comFC/cflB 339843..340505 (+) 663 WP_002949747.1 ComF family protein Machinery gene
  H1W74_RS01830 (STHERMO_0392) hpf 340584..341132 (+) 549 WP_022096635.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26037.39 Da        Isoelectric Point: 8.9833

>NTDB_id=1010694 H1W74_RS01825 WP_002949747.1 339843..340505(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_1047]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1010694 H1W74_RS01825 WP_002949747.1 339843..340505(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTACTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGGTATTGAGCTACCAAGTAAGATTATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441