Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H1W98_RS03960 Genome accession   NZ_LR822026
Coordinates   752774..753421 (-) Length   215 a.a.
NCBI ID   WP_180482066.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747774..758421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS03945 (STHERMO_0860) holA 749523..750557 (+) 1035 WP_180482068.1 DNA polymerase III subunit delta -
  H1W98_RS03950 (STHERMO_0861) sodA 750653..751258 (+) 606 WP_180482669.1 superoxide dismutase SodA -
  H1W98_RS03955 (STHERMO_0863) - 751355..752733 (+) 1379 Protein_735 serine hydrolase -
  H1W98_RS03960 (STHERMO_0864) cclA/cilC 752774..753421 (-) 648 WP_180482066.1 prepilin peptidase Machinery gene
  H1W98_RS03965 (STHERMO_0865) - 753530..754051 (+) 522 WP_179974426.1 Dps family protein -
  H1W98_RS03970 (STHERMO_0866) - 754140..754577 (+) 438 WP_141326303.1 Fur family transcriptional regulator -
  H1W98_RS03975 (STHERMO_0867) - 754687..754893 (+) 207 WP_022096801.1 YqgQ family protein -
  H1W98_RS03980 (STHERMO_0868) - 754886..755854 (+) 969 WP_179972862.1 ROK family glucokinase -
  H1W98_RS03985 (STHERMO_0869) typA 755992..757839 (+) 1848 WP_100262405.1 translational GTPase TypA -
  H1W98_RS03990 (STHERMO_0870) - 757863..758135 (+) 273 WP_179972863.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24941.10 Da        Isoelectric Point: 8.3843

>NTDB_id=1010283 H1W98_RS03960 WP_180482066.1 752774..753421(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_967]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACLFGLMYFLVRRNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1010283 H1W98_RS03960 WP_180482066.1 752774..753421(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGCTTAGTATTTTATATTTTTTTCTCGGTACCTCTTTAGGCTCCTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATTCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGTTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCCTATTTGGGCTTAT
GTACTTCCTAGTACGTAGAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGCGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381