Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H1X08_RS00355 Genome accession   NZ_LR822025
Coordinates   62019..62609 (+) Length   196 a.a.
NCBI ID   WP_111679083.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57019..67609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS00330 (STHERMO_0057) - 58149..58604 (-) 456 WP_180482350.1 DUF3021 domain-containing protein -
  H1X08_RS00335 - 58601..58991 (-) 391 Protein_45 LytTR family DNA-binding domain-containing protein -
  H1X08_RS00340 (STHERMO_0059) - 59215..59520 (+) 306 WP_180482351.1 hypothetical protein -
  H1X08_RS00345 (STHERMO_0060) hexB 59572..61515 (+) 1944 WP_180482352.1 DNA mismatch repair endonuclease MutL Machinery gene
  H1X08_RS00350 (STHERMO_0061) - 61646..61867 (+) 222 WP_011680602.1 hypothetical protein -
  H1X08_RS00355 (STHERMO_0062) ruvA 62019..62609 (+) 591 WP_111679083.1 Holliday junction branch migration protein RuvA Machinery gene
  H1X08_RS00360 (STHERMO_0063) - 62616..63170 (+) 555 WP_111679085.1 DNA-3-methyladenine glycosylase I -
  H1X08_RS00365 (STHERMO_0064) cinA 63266..64537 (+) 1272 WP_179972484.1 competence/damage-inducible protein A Machinery gene
  H1X08_RS00370 (STHERMO_0065) recA 64573..65712 (+) 1140 WP_179972485.1 recombinase RecA Machinery gene
  H1X08_RS00375 (STHERMO_0066) spx 65889..66287 (+) 399 WP_179972486.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21714.01 Da        Isoelectric Point: 5.2834

>NTDB_id=1010137 H1X08_RS00355 WP_111679083.1 62019..62609(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_961]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKTFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1010137 H1X08_RS00355 WP_111679083.1 62019..62609(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAACCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444