Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABNG17_RS11750 Genome accession   NZ_CP158181
Coordinates   2204456..2205226 (-) Length   256 a.a.
NCBI ID   WP_113387154.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2199456..2210226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS11730 (ABNG17_11730) - 2199549..2200370 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  ABNG17_RS11735 (ABNG17_11735) - 2200396..2201034 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  ABNG17_RS11740 (ABNG17_11740) glyS 2201201..2203246 (-) 2046 WP_212045898.1 glycine--tRNA ligase subunit beta -
  ABNG17_RS11745 (ABNG17_11745) glyQ 2203239..2204126 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  ABNG17_RS11750 (ABNG17_11750) recO 2204456..2205226 (-) 771 WP_113387154.1 DNA repair protein RecO Machinery gene
  ABNG17_RS11755 (ABNG17_11755) - 2205262..2205405 (-) 144 WP_003217288.1 YqzL family protein -
  ABNG17_RS11760 (ABNG17_11760) era 2205554..2206459 (-) 906 WP_003217394.1 GTPase Era -
  ABNG17_RS11765 (ABNG17_11765) - 2206452..2206850 (-) 399 WP_003217296.1 cytidine deaminase -
  ABNG17_RS11770 (ABNG17_11770) - 2206964..2207350 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  ABNG17_RS11775 (ABNG17_11775) ybeY 2207328..2207807 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  ABNG17_RS11780 (ABNG17_11780) - 2207808..2209895 (-) 2088 WP_212046021.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29262.96 Da        Isoelectric Point: 8.4348

>NTDB_id=1010136 ABNG17_RS11750 WP_113387154.1 2204456..2205226(-) (recO) [Bacillus pumilus strain RI06-95]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKMPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1010136 ABNG17_RS11750 WP_113387154.1 2204456..2205226(-) (recO) [Bacillus pumilus strain RI06-95]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGTACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGTTTTTCTAAAGATCCGTATAAAATGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment