Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABNG17_RS11465 Genome accession   NZ_CP158181
Coordinates   2153609..2153902 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148609..2158902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS11415 (ABNG17_11415) sinR 2148772..2149107 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  ABNG17_RS11420 (ABNG17_11420) - 2149175..2149975 (-) 801 WP_253622435.1 TasA family protein -
  ABNG17_RS11425 (ABNG17_11425) - 2150033..2150605 (-) 573 WP_003217306.1 signal peptidase I -
  ABNG17_RS11430 (ABNG17_11430) tapA 2150657..2151184 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  ABNG17_RS11435 (ABNG17_11435) - 2151484..2151762 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  ABNG17_RS11440 (ABNG17_11440) - 2151796..2151990 (-) 195 WP_034620826.1 YqzE family protein -
  ABNG17_RS11445 (ABNG17_11445) comGG 2152050..2152433 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  ABNG17_RS11450 (ABNG17_11450) comGF 2152430..2152960 (-) 531 WP_350303415.1 competence type IV pilus minor pilin ComGF -
  ABNG17_RS11455 (ABNG17_11455) comGE 2152869..2153186 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  ABNG17_RS11460 (ABNG17_11460) comGD 2153170..2153616 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  ABNG17_RS11465 (ABNG17_11465) comGC 2153609..2153902 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  ABNG17_RS11470 (ABNG17_11470) comGB 2153919..2154959 (-) 1041 WP_350303416.1 competence type IV pilus assembly protein ComGB -
  ABNG17_RS11475 (ABNG17_11475) comGA 2154940..2156010 (-) 1071 WP_137054976.1 competence type IV pilus ATPase ComGA Machinery gene
  ABNG17_RS11480 (ABNG17_11480) - 2156188..2157060 (-) 873 WP_350303417.1 STAS domain-containing protein -
  ABNG17_RS11490 (ABNG17_11490) - 2157284..2157664 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABNG17_RS11495 (ABNG17_11495) - 2157877..2158119 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=1010134 ABNG17_RS11465 WP_003217322.1 2153609..2153902(-) (comGC) [Bacillus pumilus strain RI06-95]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1010134 ABNG17_RS11465 WP_003217322.1 2153609..2153902(-) (comGC) [Bacillus pumilus strain RI06-95]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment