Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H1X08_RS00215 Genome accession   NZ_LR822025
Coordinates   30386..31159 (+) Length   257 a.a.
NCBI ID   WP_180482336.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25386..36159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS00195 (STHERMO_0027) - 25537..26937 (+) 1401 WP_180482334.1 CHAP domain-containing protein -
  H1X08_RS00200 (STHERMO_0028) - 27152..28117 (+) 966 WP_180482335.1 ribose-phosphate diphosphokinase -
  H1X08_RS00205 - 28166..29012 (-) 847 Protein_19 transposase -
  H1X08_RS00210 (STHERMO_0031) - 29224..30399 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  H1X08_RS00215 (STHERMO_0032) recO 30386..31159 (+) 774 WP_180482336.1 DNA repair protein RecO Machinery gene
  H1X08_RS00220 (STHERMO_0033) plsX 31375..32379 (+) 1005 WP_179972468.1 phosphate acyltransferase PlsX -
  H1X08_RS00225 (STHERMO_0034) - 32379..32624 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  H1X08_RS00230 (STHERMO_0035) purC 32909..33616 (+) 708 WP_179972469.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29768.07 Da        Isoelectric Point: 5.4231

>NTDB_id=1010133 H1X08_RS00215 WP_180482336.1 30386..31159(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_961]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTLNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEKDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1010133 H1X08_RS00215 WP_180482336.1 30386..31159(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTCAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTTTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCTAATCATTACGAAAAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTTCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.265

98.444

0.603

Multiple sequence alignment