Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABNG17_RS11415 Genome accession   NZ_CP158181
Coordinates   2148772..2149107 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2143772..2154107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS11395 (ABNG17_11395) gcvT 2144249..2145346 (-) 1098 WP_350303414.1 glycine cleavage system aminomethyltransferase GcvT -
  ABNG17_RS11400 (ABNG17_11400) - 2145909..2147579 (+) 1671 WP_212045915.1 SNF2-related protein -
  ABNG17_RS11405 (ABNG17_11405) - 2147594..2148391 (+) 798 WP_003217448.1 YqhG family protein -
  ABNG17_RS11410 (ABNG17_11410) - 2148574..2148738 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  ABNG17_RS11415 (ABNG17_11415) sinR 2148772..2149107 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  ABNG17_RS11420 (ABNG17_11420) - 2149175..2149975 (-) 801 WP_253622435.1 TasA family protein -
  ABNG17_RS11425 (ABNG17_11425) - 2150033..2150605 (-) 573 WP_003217306.1 signal peptidase I -
  ABNG17_RS11430 (ABNG17_11430) tapA 2150657..2151184 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  ABNG17_RS11435 (ABNG17_11435) - 2151484..2151762 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  ABNG17_RS11440 (ABNG17_11440) - 2151796..2151990 (-) 195 WP_034620826.1 YqzE family protein -
  ABNG17_RS11445 (ABNG17_11445) comGG 2152050..2152433 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  ABNG17_RS11450 (ABNG17_11450) comGF 2152430..2152960 (-) 531 WP_350303415.1 competence type IV pilus minor pilin ComGF -
  ABNG17_RS11455 (ABNG17_11455) comGE 2152869..2153186 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  ABNG17_RS11460 (ABNG17_11460) comGD 2153170..2153616 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  ABNG17_RS11465 (ABNG17_11465) comGC 2153609..2153902 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=1010133 ABNG17_RS11415 WP_012010555.1 2148772..2149107(+) (sinR) [Bacillus pumilus strain RI06-95]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1010133 ABNG17_RS11415 WP_012010555.1 2148772..2149107(+) (sinR) [Bacillus pumilus strain RI06-95]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment