Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABNG17_RS11475 Genome accession   NZ_CP158181
Coordinates   2154940..2156010 (-) Length   356 a.a.
NCBI ID   WP_137054976.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2149940..2161010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS11425 (ABNG17_11425) - 2150033..2150605 (-) 573 WP_003217306.1 signal peptidase I -
  ABNG17_RS11430 (ABNG17_11430) tapA 2150657..2151184 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  ABNG17_RS11435 (ABNG17_11435) - 2151484..2151762 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  ABNG17_RS11440 (ABNG17_11440) - 2151796..2151990 (-) 195 WP_034620826.1 YqzE family protein -
  ABNG17_RS11445 (ABNG17_11445) comGG 2152050..2152433 (-) 384 WP_253622433.1 competence type IV pilus minor pilin ComGG -
  ABNG17_RS11450 (ABNG17_11450) comGF 2152430..2152960 (-) 531 WP_350303415.1 competence type IV pilus minor pilin ComGF -
  ABNG17_RS11455 (ABNG17_11455) comGE 2152869..2153186 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  ABNG17_RS11460 (ABNG17_11460) comGD 2153170..2153616 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  ABNG17_RS11465 (ABNG17_11465) comGC 2153609..2153902 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  ABNG17_RS11470 (ABNG17_11470) comGB 2153919..2154959 (-) 1041 WP_350303416.1 competence type IV pilus assembly protein ComGB -
  ABNG17_RS11475 (ABNG17_11475) comGA 2154940..2156010 (-) 1071 WP_137054976.1 competence type IV pilus ATPase ComGA Machinery gene
  ABNG17_RS11480 (ABNG17_11480) - 2156188..2157060 (-) 873 WP_350303417.1 STAS domain-containing protein -
  ABNG17_RS11490 (ABNG17_11490) - 2157284..2157664 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABNG17_RS11495 (ABNG17_11495) - 2157877..2158119 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ABNG17_RS11500 (ABNG17_11500) - 2158365..2159003 (-) 639 WP_003217463.1 MBL fold metallo-hydrolase -
  ABNG17_RS11505 (ABNG17_11505) - 2159161..2159334 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  ABNG17_RS11510 (ABNG17_11510) - 2159360..2159674 (-) 315 WP_003217504.1 MTH1187 family thiamine-binding protein -
  ABNG17_RS11515 (ABNG17_11515) - 2159753..2161006 (-) 1254 WP_003217413.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40351.81 Da        Isoelectric Point: 9.5361

>NTDB_id=1010135 ABNG17_RS11475 WP_137054976.1 2154940..2156010(-) (comGA) [Bacillus pumilus strain RI06-95]
MYGIEYLGQELLEEACRMRASDVHIVPKEKKASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRRGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1010135 ABNG17_RS11475 WP_137054976.1 2154940..2156010(-) (comGA) [Bacillus pumilus strain RI06-95]
TTGTATGGGATTGAATACTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTTCC
AAAGGAAAAGAAAGCGTCTGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATCGGAGAAAAACGGAGACCGCAAAATGGGTCATTAGCT
GTGATGCTAAGAAGGGGTCAGGTGTTTATTCGGATGTCTACCCTACCAACTGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCATCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTCATTTTATTTACCGGTCCAACCAATTCAGGGAAAACAACAACCCTTTATTCATTGATCCAGTTT
GCAAAAAAGAATTTCAACAGAAATATTATTACACTTGAAGATCCTGTGGAAACGAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCCGGTATCACATATGCGGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCTCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACACTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACGATGGTGGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGCCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACATTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.407

99.438

0.64

Multiple sequence alignment