Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H0513_RS07225 Genome accession   NZ_LR822023
Coordinates   1374126..1376102 (-) Length   658 a.a.
NCBI ID   WP_179972091.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369126..1381102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS07205 (STHERMO_1621) - 1369627..1370553 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein -
  H0513_RS07210 (STHERMO_1622) amiE 1370546..1371631 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H0513_RS07215 (STHERMO_1623) amiD 1371641..1372567 (-) 927 WP_179972090.1 oligopeptide ABC transporter permease OppC Regulator
  H0513_RS07220 (STHERMO_1624) amiC 1372567..1374060 (-) 1494 WP_164135541.1 ABC transporter permease Regulator
  H0513_RS07225 (STHERMO_1625) amiA3 1374126..1376102 (-) 1977 WP_179972091.1 peptide ABC transporter substrate-binding protein Regulator
  H0513_RS07230 - 1376338..1376528 (-) 191 Protein_1358 IS3 family transposase -
  H0513_RS11435 - 1376522..1376932 (-) 411 Protein_1359 ATP-binding cassette domain-containing protein -
  H0513_RS11440 (STHERMO_1628) - 1377030..1377278 (-) 249 Protein_1360 TatD family hydrolase -
  H0513_RS07250 (STHERMO_1629) - 1377627..1378820 (+) 1194 WP_100262689.1 OFA family MFS transporter -
  H0513_RS07255 - 1378880..1380230 (-) 1351 Protein_1362 IS3 family transposase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72296.28 Da        Isoelectric Point: 5.2731

>NTDB_id=1010091 H0513_RS07225 WP_179972091.1 1374126..1376102(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_368]
MKKSKWLALAGVALLGVGVLTACSSKSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPS
VAEDWSVSKDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVG
VKAIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWD
KKNVHFDAIKLSYYDGSDQDALVRGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAK
KTDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGV
NFADGQDGLYNDEKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDL
ENATLNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKTFNGYDDPNNAAAVQVGLKDYDALLNSAASETSD
LNVRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLK
EKKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1010091 H0513_RS07225 WP_179972091.1 1374126..1376102(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAACGGCTTGTTCATCTAAATC
TAAATCAAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATA
CGGGACCTACAAAAACTGCTGTGACAAATGGCGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCA
GTAGCTGAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGGTCAAATGGTATACTTC
TGATGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGACTCCAAAGCAGGTG
GTATCTATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGT
GTCAAGGCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAG
TTTGCTTTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCC
TTTATAATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGAC
AAGAAAAATGTACACTTTGATGCTATCAAATTATCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCAC
TGATGGTGCTTATAATATTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATA
TTTATTACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAA
AAGACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGA
CCGTAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATT
TTGTCAGTGCAGGCGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTT
AACTTTGCAGATGGTCAAGACGGTCTCTACAATGATGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCA
AGGAGAAGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAAT
CTTTGAAACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTG
GAAAATGCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGACTA
TCAAGATCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGACTTTCAATGGTTATGATGATC
CAAATAATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGAC
CTTAATGTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGG
TAATGGTGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAG
ACTACTTAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAA
GAAAAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

95.296

100

0.954
  amiA3 Streptococcus thermophilus LMG 18311

94.992

100

0.951
  amiA Streptococcus salivarius strain HSISS4

90.426

100

0.904