Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABN775_RS05480 Genome accession   NZ_CP158175
Coordinates   1152425..1152940 (+) Length   171 a.a.
NCBI ID   WP_006470425.1    Uniprot ID   -
Organism   Brucella intermedia strain IITR130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1147425..1157940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN775_RS05455 - 1147430..1147750 (+) 321 WP_022568860.1 hypothetical protein -
  ABN775_RS05460 - 1147793..1148374 (-) 582 WP_350303199.1 hypothetical protein -
  ABN775_RS05465 uvrA 1148509..1151433 (-) 2925 WP_006466768.1 excinuclease ABC subunit UvrA -
  ABN775_RS05470 - 1151549..1151760 (-) 212 Protein_1075 hypothetical protein -
  ABN775_RS05475 - 1152090..1152284 (-) 195 WP_172491095.1 hypothetical protein -
  ABN775_RS05480 ssb 1152425..1152940 (+) 516 WP_006470425.1 single-stranded DNA-binding protein Machinery gene
  ABN775_RS05485 arsH 1153227..1153940 (-) 714 WP_006466772.1 arsenical resistance protein ArsH -
  ABN775_RS05490 arsC 1153937..1154347 (-) 411 WP_006466773.1 arsenate reductase (glutaredoxin) -
  ABN775_RS05495 arsB 1154344..1155405 (-) 1062 WP_006466774.1 ACR3 family arsenite efflux transporter -
  ABN775_RS05500 - 1155548..1155907 (-) 360 WP_006466775.1 metalloregulator ArsR/SmtB family transcription factor -
  ABN775_RS05505 phnF 1156060..1156812 (-) 753 WP_039852571.1 phosphonate metabolism transcriptional regulator PhnF -
  ABN775_RS05510 phnG 1156925..1157440 (+) 516 WP_022568695.1 phosphonate C-P lyase system protein PhnG -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18436.17 Da        Isoelectric Point: 5.3476

>NTDB_id=1010076 ABN775_RS05480 WP_006470425.1 1152425..1152940(+) (ssb) [Brucella intermedia strain IITR130]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGGSGGG
FSRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1010076 ABN775_RS05480 WP_006470425.1 1152425..1152940(+) (ssb) [Brucella intermedia strain IITR130]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAACCTTGGTGCCGATCCGGAAATTCGTCGTCTGAACTCGGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCTGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTCGTCATTTTCAACGAGAACCTTGCCAAGGTCGCGGAGCAATATCTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGTGCGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAGTCGTGCTGCAGAAGTT
CCGCGGCGAGTTGCAGATGCTCGACAGCCGTGGTGAAGGCGGCGGTGAGGGCCGTTCGTTCGGCGGTGGCGGCAATCGCA
ACCAGATGTCGGATTATTCCGGTGGCGGCGGCGACTTCGGTTCGTCCGGCCCGTCTTCGGGTGGCGGCAGCGGCGGCGGT
TTCTCCCGCGACCTGGATGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.532
  ssb Vibrio cholerae strain A1552

63.559

69.006

0.439
  ssb Neisseria meningitidis MC58

37.222

100

0.392
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.386

Multiple sequence alignment