Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H0514_RS08235 Genome accession   NZ_LR822020
Coordinates   1600579..1601241 (-) Length   220 a.a.
NCBI ID   WP_179972646.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595579..1606241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS08230 (STHERMO_1893) hpf 1599952..1600500 (-) 549 WP_095559242.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H0514_RS08235 (STHERMO_1894) comFC/cflB 1600579..1601241 (-) 663 WP_179972646.1 ComF family protein Machinery gene
  H0514_RS08240 (STHERMO_1895) comFA/cflA 1601222..1602541 (-) 1320 WP_084828509.1 DEAD/DEAH box helicase Machinery gene
  H0514_RS08245 (STHERMO_1896) - 1602597..1603223 (+) 627 WP_011225515.1 YigZ family protein -
  H0514_RS08250 (STHERMO_1897) cysK 1603325..1604251 (+) 927 WP_014621180.1 cysteine synthase A -
  H0514_RS08255 - 1604418..1605079 (-) 662 Protein_1588 CBS and ACT domain-containing protein -
  H0514_RS08260 (STHERMO_1901) - 1605215..1605925 (-) 711 WP_179972645.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26140.51 Da        Isoelectric Point: 8.9833

>NTDB_id=1009998 H0514_RS08235 WP_179972646.1 1600579..1601241(-) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_956]
MKCLLCNEWIEPVDQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKFFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1009998 H0514_RS08235 WP_179972646.1 1600579..1601241(-) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGATCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTTTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441

Multiple sequence alignment