Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ABFV67_RS05645 Genome accession   NZ_CP158116
Coordinates   1197498..1198085 (+) Length   195 a.a.
NCBI ID   WP_154167867.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192498..1203085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS05630 (ABFV67_05630) panP 1193410..1195062 (-) 1653 WP_350007010.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ABFV67_RS05635 (ABFV67_05635) - 1195266..1196171 (-) 906 WP_342639277.1 lysine exporter LysO family protein -
  ABFV67_RS05640 (ABFV67_05640) - 1196225..1197145 (-) 921 WP_154167864.1 HDOD domain-containing protein -
  ABFV67_RS05645 (ABFV67_05645) tfoX 1197498..1198085 (+) 588 WP_154167867.1 TfoX/Sxy family DNA transformation protein Regulator
  ABFV67_RS05650 (ABFV67_05650) - 1198223..1198771 (-) 549 WP_158138576.1 hypothetical protein -
  ABFV67_RS05655 (ABFV67_05655) - 1199084..1199581 (-) 498 WP_154167871.1 response regulator -
  ABFV67_RS05660 (ABFV67_05660) - 1199592..1201526 (-) 1935 WP_342639278.1 ATP-binding protein -
  ABFV67_RS05665 (ABFV67_05665) - 1201712..1202974 (+) 1263 WP_342639279.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22619.11 Da        Isoelectric Point: 9.1933

>NTDB_id=1009819 ABFV67_RS05645 WP_154167867.1 1197498..1198085(+) (tfoX) [Vibrio metschnikovii strain IS021]
MSETTFFDYVIKFGDYQKRSMFGGIGLFQQEAMYALLTEGAIFLRGSEELDELLIQLGCEKFRHVKKQTTATVNYYDITQ
LFEQGYPQLDDIIQRSIFYSISQRSFQKSQASRRLRDLPNMQLTLERMVKKAGVSDVETFVKLGAPAVFSKVRKIYGSDV
DVKLLWKFAGAIEGVHWKLLQEPQKRQLLEYCQAR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1009819 ABFV67_RS05645 WP_154167867.1 1197498..1198085(+) (tfoX) [Vibrio metschnikovii strain IS021]
ATGAGTGAGACAACATTTTTTGATTATGTAATTAAGTTTGGGGACTACCAAAAACGCTCAATGTTCGGTGGTATTGGCTT
ATTTCAACAAGAAGCCATGTACGCATTGTTAACTGAGGGGGCGATTTTCCTTCGTGGTAGTGAAGAACTCGATGAATTAT
TAATCCAGTTAGGCTGTGAAAAATTCCGTCATGTGAAAAAGCAGACCACAGCAACGGTTAATTACTATGATATTACGCAA
CTTTTCGAGCAAGGTTATCCACAATTAGACGATATTATTCAACGTTCTATCTTTTATTCTATTTCGCAACGTAGTTTTCA
AAAATCGCAGGCTAGCCGTCGGTTAAGAGACTTGCCTAATATGCAATTGACTCTTGAGCGAATGGTAAAAAAAGCTGGCG
TCAGCGATGTGGAAACTTTTGTAAAACTTGGCGCTCCTGCTGTATTTAGTAAGGTTCGCAAAATTTATGGCAGTGATGTT
GATGTTAAGCTGCTGTGGAAGTTTGCTGGAGCGATTGAAGGGGTGCACTGGAAGCTACTCCAAGAGCCACAAAAACGTCA
GTTATTAGAATATTGCCAAGCTCGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-97)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

76.923

100

0.769
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

76.923

100

0.769
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

76.923

100

0.769
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

76.923

100

0.769
  tfoX Vibrio cholerae strain A1552

76.923

100

0.769
  tfoX Vibrio campbellii strain DS40M4

65.803

98.974

0.651
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.803

98.974

0.651
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment