Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   H0511_RS03865 Genome accession   NZ_LR822017
Coordinates   727457..728104 (-) Length   215 a.a.
NCBI ID   WP_179974425.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 722457..733104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS03850 (STHERMO_0817) holA 724209..725243 (+) 1035 WP_179974423.1 DNA polymerase III subunit delta -
  H0511_RS03855 (STHERMO_0818) sodA 725338..725943 (+) 606 WP_179974424.1 superoxide dismutase SodA -
  H0511_RS03860 (STHERMO_0821) - 726423..727417 (+) 995 Protein_716 serine hydrolase -
  H0511_RS03865 cclA/cilC 727457..728104 (-) 648 WP_179974425.1 prepilin peptidase Machinery gene
  H0511_RS03870 (STHERMO_0822) - 728213..728734 (+) 522 WP_179974426.1 Dps family protein -
  H0511_RS03875 - 728859..729233 (-) 375 WP_179974427.1 prepilin peptidase -
  H0511_RS03880 (STHERMO_0823) - 729342..729863 (+) 522 WP_179974428.1 Dps family protein -
  H0511_RS03885 (STHERMO_0824) - 729952..730389 (+) 438 WP_141326303.1 Fur family transcriptional regulator -
  H0511_RS03890 (STHERMO_0825) - 730500..730706 (+) 207 WP_179974429.1 YqgQ family protein -
  H0511_RS03895 (STHERMO_0826) - 730699..731667 (+) 969 WP_179974430.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24941.10 Da        Isoelectric Point: 8.3843

>NTDB_id=1009742 H0511_RS03865 WP_179974425.1 727457..728104(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_336]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRICQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACLFGLMYFLVRRNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1009742 H0511_RS03865 WP_179974425.1 727457..728104(-) (cclA/cilC) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGCTTAGTATTTTATATTTTTTTCTCGGTACCTCTTTAGGCTCCTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATTCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGATATGTCAAAGTTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCCTATTTGGGCTTAT
GTACTTCCTAGTACGTAGAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGCGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381