Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H0511_RS01925 Genome accession   NZ_LR822017
Coordinates   359076..359738 (+) Length   220 a.a.
NCBI ID   WP_179974254.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354076..364738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS01900 (STHERMO_0385) - 354471..355181 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  H0511_RS01905 (STHERMO_0386) - 355317..355947 (+) 631 Protein_330 CBS domain-containing protein -
  H0511_RS01910 (STHERMO_0388) cysK 356065..356991 (-) 927 WP_179974252.1 cysteine synthase A -
  H0511_RS01915 (STHERMO_0389) - 357093..357719 (-) 627 WP_011225515.1 YigZ family protein -
  H0511_RS01920 (STHERMO_0390) comFA/cflA 357775..359073 (+) 1299 WP_179974253.1 DEAD/DEAH box helicase Machinery gene
  H0511_RS01925 (STHERMO_0391) comFC/cflB 359076..359738 (+) 663 WP_179974254.1 ComF family protein Machinery gene
  H0511_RS01930 (STHERMO_0392) hpf 359817..360374 (+) 558 WP_179974255.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26086.56 Da        Isoelectric Point: 9.6048

>NTDB_id=1009725 H0511_RS01925 WP_179974254.1 359076..359738(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_336]
MKCLLCNEWIEPVAQLNDLIMFKQRREYSCENCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWTKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERQEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREKRLGQDNPFSLKKGIKLPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1009725 H0511_RS01925 WP_179974254.1 359076..359738(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAATGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAAATTGTAAAGCTCAATTTAAAAAACTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGACGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGATATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCAGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAAAGCGGTTAGGTCAAGATAATCCTTTCAGTTTGAAGAAAGGTATTAAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

43.694

100

0.441
  comFC/cflB Streptococcus mitis NCTC 12261

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae Rx1

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae D39

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae R6

43.243

100

0.436