Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H0511_RS00450 Genome accession   NZ_LR822017
Coordinates   78347..78937 (+) Length   196 a.a.
NCBI ID   WP_179974147.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73347..83937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS00425 (STHERMO_0080) - 74477..74932 (-) 456 WP_179974143.1 DUF3021 domain-containing protein -
  H0511_RS00430 (STHERMO_0081) - 74929..75367 (-) 439 Protein_65 LytTR family DNA-binding domain-containing protein -
  H0511_RS00435 (STHERMO_0082) - 75546..75848 (+) 303 WP_179974144.1 hypothetical protein -
  H0511_RS00440 (STHERMO_0083) hexB 75899..77842 (+) 1944 WP_179974145.1 DNA mismatch repair endonuclease MutL Machinery gene
  H0511_RS00445 (STHERMO_0084) - 77972..78193 (+) 222 WP_179974146.1 hypothetical protein -
  H0511_RS00450 (STHERMO_0085) ruvA 78347..78937 (+) 591 WP_179974147.1 Holliday junction branch migration protein RuvA Machinery gene
  H0511_RS00455 (STHERMO_0086) - 78944..79498 (+) 555 WP_179974148.1 DNA-3-methyladenine glycosylase I -
  H0511_RS00460 (STHERMO_0087) cinA 79594..80865 (+) 1272 WP_179974149.1 competence/damage-inducible protein A Machinery gene
  H0511_RS00465 (STHERMO_0088) recA 80901..82040 (+) 1140 WP_179972485.1 recombinase RecA Machinery gene
  H0511_RS00470 (STHERMO_0089) spx 82217..82615 (+) 399 WP_179972486.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21808.13 Da        Isoelectric Point: 6.0054

>NTDB_id=1009708 H0511_RS00450 WP_179974147.1 78347..78937(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_336]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLSGKFAELPAETTNTTANQTARNHQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1009708 H0511_RS00450 WP_179974147.1 78347..78937(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGTATGATTACATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAAGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGTCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAAGAAATCATCAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.872

100

0.434

Multiple sequence alignment