Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABJ384_RS13805 Genome accession   NZ_CP157981
Coordinates   2863445..2864590 (+) Length   381 a.a.
NCBI ID   WP_349928004.1    Uniprot ID   A0AAU7SW90
Organism   Acinetobacter sp. A1-4-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2858445..2869590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS13785 (ABJ384_13775) - 2858947..2860959 (-) 2013 WP_349927998.1 TonB-dependent copper receptor -
  ABJ384_RS13790 (ABJ384_13780) - 2861030..2861452 (-) 423 WP_349928000.1 DUF2946 family protein -
  ABJ384_RS13795 (ABJ384_13785) def 2861546..2862076 (-) 531 WP_086196623.1 peptide deformylase -
  ABJ384_RS13800 (ABJ384_13790) tsaP 2862196..2863350 (+) 1155 WP_349928002.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABJ384_RS13805 (ABJ384_13795) dprA 2863445..2864590 (+) 1146 WP_349928004.1 DNA-processing protein DprA Machinery gene
  ABJ384_RS13810 (ABJ384_13800) - 2864633..2865202 (+) 570 WP_349928006.1 Sua5/YciO/YrdC/YwlC family protein -
  ABJ384_RS13815 (ABJ384_13805) - 2865621..2866535 (-) 915 WP_349928008.1 DMT family transporter -
  ABJ384_RS13820 (ABJ384_13810) - 2866719..2867471 (+) 753 WP_349928010.1 helix-turn-helix transcriptional regulator -
  ABJ384_RS13825 (ABJ384_13815) - 2867667..2868209 (+) 543 WP_349928012.1 hypothetical protein -
  ABJ384_RS13830 (ABJ384_13820) - 2868361..2868906 (+) 546 WP_349928014.1 glutathione peroxidase -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 43007.08 Da        Isoelectric Point: 6.4973

>NTDB_id=1009496 ABJ384_RS13805 WP_349928004.1 2863445..2864590(+) (dprA) [Acinetobacter sp. A1-4-2]
MLSSLNSLQLDYIRVWFLVQHSLPSFYKIQEYYTHLAEATQPDQIETWQKLGIHKNHIQRLRDFHLPESQRQFQHCIDLI
QKQSDFVLLQDDAHYPQQLLPYADRPPILFGQGNAQALLQAQIAIVGSRKPSNHGRQVTYDFAYYLSEKGFYISSGLAQG
IDEAAHQGALQYNRTIAVMGTGLDLTYPSQNQPLRQQILAQACTVITEFLPGTPPLQQHFPRRNRIVSALSLGVIVAEAA
LKSGSLITAKWAAEQGKLIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVIEDLALPTQWHTQQHSEQASKLAPLDAQP
ELPAHLSVLYNQLDWVGQLLDELVIQLQLDIATLTSQLMELELLGLCTQQAGMYLRCRPGK

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1009496 ABJ384_RS13805 WP_349928004.1 2863445..2864590(+) (dprA) [Acinetobacter sp. A1-4-2]
ATGCTCAGTTCATTAAATTCCTTGCAGCTGGATTACATTCGCGTATGGTTTCTGGTACAGCACTCTCTGCCCAGCTTTTA
TAAAATCCAGGAATACTATACCCATCTGGCCGAAGCAACGCAGCCTGACCAAATTGAAACATGGCAAAAACTTGGCATTC
ACAAAAATCATATTCAGCGGCTGCGAGATTTTCACCTTCCTGAATCACAGCGGCAATTTCAACATTGTATTGATCTGATT
CAAAAACAGAGTGATTTTGTACTGTTGCAGGATGATGCACACTACCCGCAGCAACTGCTGCCCTATGCCGATAGGCCGCC
GATCCTGTTTGGTCAGGGCAATGCCCAAGCCCTGTTACAAGCACAAATTGCCATTGTCGGTAGCCGTAAACCCAGCAATC
ACGGACGCCAGGTGACCTATGACTTTGCTTATTATCTCAGTGAAAAAGGCTTTTATATCAGCAGTGGCTTGGCACAAGGC
ATTGATGAAGCCGCCCATCAGGGTGCTTTGCAGTACAATCGCACCATTGCCGTGATGGGTACAGGCTTGGACCTGACCTA
TCCCAGTCAAAATCAGCCGTTGCGACAGCAGATTCTTGCTCAGGCCTGTACGGTAATCACCGAGTTCTTACCCGGAACCC
CTCCTTTACAGCAGCATTTTCCGCGGCGCAACCGCATTGTCAGTGCCTTAAGCCTCGGCGTGATTGTGGCAGAAGCTGCA
CTGAAAAGTGGTTCTTTAATCACGGCGAAATGGGCAGCGGAACAAGGCAAATTGATCTTTGCCATTCCAGGACATATTTA
TAGCGAGCATCATCAAGGCTGCCATCAACTGATTCGTGAAGGTGCCATTTTAGTCGATCATCCTGAACAGGTGATTGAAG
ATCTGGCCCTGCCGACACAATGGCATACTCAACAGCACAGCGAACAGGCCAGCAAACTTGCCCCTTTGGATGCCCAGCCC
GAACTGCCAGCGCATTTAAGCGTTTTGTACAATCAGCTGGACTGGGTCGGGCAACTTCTGGATGAGCTGGTCATTCAACT
GCAGTTAGACATTGCCACCCTGACCAGCCAATTGATGGAACTGGAATTACTTGGCTTGTGCACCCAACAAGCTGGCATGT
ATCTACGTTGTCGTCCAGGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.737

99.738

0.646

  dprA Acinetobacter baumannii D1279779

64.474

99.738

0.643

  dprA Acinetobacter baylyi ADP1

61.358

100

0.617


Multiple sequence alignment