Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABJ384_RS13800 Genome accession   NZ_CP157981
Coordinates   2862196..2863350 (+) Length   384 a.a.
NCBI ID   WP_349928002.1    Uniprot ID   A0AAU7SWG2
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2857196..2868350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS13785 (ABJ384_13775) - 2858947..2860959 (-) 2013 WP_349927998.1 TonB-dependent copper receptor -
  ABJ384_RS13790 (ABJ384_13780) - 2861030..2861452 (-) 423 WP_349928000.1 DUF2946 family protein -
  ABJ384_RS13795 (ABJ384_13785) def 2861546..2862076 (-) 531 WP_086196623.1 peptide deformylase -
  ABJ384_RS13800 (ABJ384_13790) tsaP 2862196..2863350 (+) 1155 WP_349928002.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABJ384_RS13805 (ABJ384_13795) dprA 2863445..2864590 (+) 1146 WP_349928004.1 DNA-processing protein DprA Machinery gene
  ABJ384_RS13810 (ABJ384_13800) - 2864633..2865202 (+) 570 WP_349928006.1 Sua5/YciO/YrdC/YwlC family protein -
  ABJ384_RS13815 (ABJ384_13805) - 2865621..2866535 (-) 915 WP_349928008.1 DMT family transporter -
  ABJ384_RS13820 (ABJ384_13810) - 2866719..2867471 (+) 753 WP_349928010.1 helix-turn-helix transcriptional regulator -
  ABJ384_RS13825 (ABJ384_13815) - 2867667..2868209 (+) 543 WP_349928012.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41971.48 Da        Isoelectric Point: 9.5247

>NTDB_id=1009495 ABJ384_RS13800 WP_349928002.1 2862196..2863350(+) (tsaP) [Acinetobacter sp. A1-4-2]
MKKVLKGMPTFSALGFKKQLLALTVCVSVGAGMVSIAEAAPARNINPPALKAGAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCTYNGKPIIGKDEGDGCEGIIRRYTGGTKLQPQVRVESLNNAIPVIPLEHIKQWLE
RSTIVPPESITGTPYILGTADQRVLAAKGQTVYARGNGLEVGQRYAVYREGEPYMFTDAKGKKYNAGLELIQVASGIAIR
GENDITTLELTDTYNSEVRRGDRVLPEYDPMLPTLFYPTNAEDVVAGGQVVRVMGSIGTAAKHSVVTIDRGSLQGVQAGQ
VLTVSQKGEVVTDPKTKERIQLPGQRIGNIMVFKSFDNLSYAYVLDSELPIKVGAGIQPPLMDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1009495 ABJ384_RS13800 WP_349928002.1 2862196..2863350(+) (tsaP) [Acinetobacter sp. A1-4-2]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGTTTAAAAAACAATTGTTGGCACTTACCGTATGTGT
AAGTGTTGGGGCTGGCATGGTCAGCATTGCTGAAGCAGCACCTGCCCGTAATATCAATCCACCTGCATTAAAAGCCGGAG
CACCACAAGTTTATGTGGTGAAAAAAGGCGATACTTTATGGGATATTTCCAAAAGATTTTTGAAGAATCCAGTACGTTGG
CCTGAAATCTGGGCCAGCAATAAGCATGTGAAAAACCCACACTGGATTTTCCCGGGCGACCGCCTGCTCATGTGTACCTA
TAACGGCAAACCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATCCGTCGTTATACCGGTGGCACCAAGT
TACAACCTCAGGTTCGGGTAGAATCATTAAACAATGCCATTCCAGTCATTCCGCTGGAACACATCAAGCAGTGGTTAGAA
CGCAGCACCATTGTTCCACCTGAATCCATCACAGGTACGCCATACATTTTAGGCACGGCGGACCAACGTGTTCTAGCTGC
CAAAGGTCAAACCGTTTATGCGCGCGGTAATGGTCTGGAAGTGGGTCAACGCTATGCCGTTTACCGTGAAGGTGAACCGT
ATATGTTTACCGATGCAAAAGGCAAAAAATATAATGCCGGTCTTGAATTGATTCAGGTGGCATCTGGCATTGCCATCCGT
GGTGAAAATGACATTACTACGCTTGAACTGACAGATACCTATAATTCAGAAGTTCGTCGTGGTGACCGCGTACTGCCTGA
ATACGATCCAATGCTTCCAACCTTGTTCTACCCAACCAATGCTGAAGATGTGGTTGCCGGTGGCCAAGTGGTTCGCGTGA
TGGGATCAATTGGCACTGCTGCGAAACACAGTGTAGTGACGATTGACCGTGGTAGTTTGCAAGGCGTTCAAGCTGGACAG
GTATTGACGGTGAGCCAGAAAGGCGAAGTCGTGACTGACCCGAAAACCAAAGAGCGTATTCAACTCCCTGGACAGCGCAT
TGGTAACATCATGGTATTCAAGAGCTTTGATAACCTGAGTTATGCCTATGTACTGGATAGCGAATTGCCAATTAAAGTCG
GTGCTGGCATCCAGCCACCACTAATGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.43

100

0.698

Multiple sequence alignment