Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABM479_RS06935 Genome accession   NZ_CP157960
Coordinates   1410449..1411015 (+) Length   188 a.a.
NCBI ID   WP_174174835.1    Uniprot ID   A0AAU7RVQ9
Organism   Rhizobium sp. ZPR3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1405449..1416015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABM479_RS06925 (ABM479_06925) - 1406416..1407222 (-) 807 WP_349958246.1 DUF72 domain-containing protein -
  ABM479_RS06930 (ABM479_06930) uvrA 1407256..1410177 (-) 2922 WP_349958247.1 excinuclease ABC subunit UvrA -
  ABM479_RS06935 (ABM479_06935) ssb 1410449..1411015 (+) 567 WP_174174835.1 single-stranded DNA-binding protein Machinery gene
  ABM479_RS06940 (ABM479_06940) - 1411066..1411698 (-) 633 WP_174174837.1 MarC family protein -
  ABM479_RS06945 (ABM479_06945) gyrA 1411924..1414719 (+) 2796 WP_349958248.1 DNA gyrase subunit A -
  ABM479_RS06950 (ABM479_06950) - 1414879..1415769 (-) 891 WP_349958249.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19874.58 Da        Isoelectric Point: 5.3534

>NTDB_id=1009408 ABM479_RS06935 WP_174174835.1 1410449..1411015(+) (ssb) [Rhizobium sp. ZPR3]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLNIATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWQDQNGQDKYSTEIVLQGFNSTLTMLDGRGEGGGAMEGGSRGGRGGGDFGGGYGGDYGGDDYGQSSSQGSSR
SGGGNRGGGNQGGGGGNFSRDLDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1009408 ABM479_RS06935 WP_174174835.1 1410449..1411015(+) (ssb) [Rhizobium sp. ZPR3]
ATGGCCGGTAGTGTGAACAAGGTAATTCTGATTGGAAATCTCGGGGCGGACCCCGAAATCCGCCGCACGCAGGACGGCCG
CCCGATCGCCAACCTCAACATCGCGACCTCAGAAACCTGGCGTGACCGCAATTCCGGCGAACGCAAGGAAAAGACGGAGT
GGCACCGCGTCGTCATTTTCAATGAAGGCCTCTGCAAGGTCGCCGAGCAATATTTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTGCAGACCCGCAAGTGGCAGGATCAGAACGGCCAGGATAAGTATTCGACCGAAATCGTTCTGCAGGGCTT
CAATTCGACCCTGACCATGCTCGATGGTCGCGGCGAAGGCGGTGGTGCAATGGAAGGCGGAAGCCGCGGCGGTCGCGGCG
GCGGTGATTTTGGTGGCGGCTACGGCGGCGATTATGGCGGTGATGACTACGGCCAGTCTTCTTCGCAGGGCTCTTCCCGC
AGTGGCGGCGGCAACCGCGGGGGTGGCAACCAGGGTGGCGGCGGCGGGAATTTCTCGCGCGATCTGGATGATGACATCCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.878

100

0.489
  ssb Vibrio cholerae strain A1552

49.189

98.404

0.484
  ssb Neisseria meningitidis MC58

37.895

100

0.383
  ssb Neisseria gonorrhoeae MS11

37.368

100

0.378

Multiple sequence alignment