Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABNK63_RS03040 Genome accession   NZ_CP157948
Coordinates   694703..695761 (+) Length   352 a.a.
NCBI ID   WP_350016646.1    Uniprot ID   A0AAU7QM92
Organism   Rhodanobacter sp. IGA1.0     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689703..700761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK63_RS03025 (ABNK63_03020) - 689804..691099 (+) 1296 WP_007807225.1 citrate synthase -
  ABNK63_RS03030 (ABNK63_03025) - 691163..691837 (-) 675 WP_350016645.1 hypothetical protein -
  ABNK63_RS03035 (ABNK63_03030) - 691905..694430 (-) 2526 WP_040673103.1 penicillin-binding protein 1A -
  ABNK63_RS03040 (ABNK63_03035) pilM 694703..695761 (+) 1059 WP_350016646.1 pilus assembly protein PilM Machinery gene
  ABNK63_RS03045 (ABNK63_03040) - 695761..696480 (+) 720 WP_350016647.1 PilN domain-containing protein -
  ABNK63_RS03050 (ABNK63_03045) pilO 696483..697142 (+) 660 WP_007807213.1 type 4a pilus biogenesis protein PilO -
  ABNK63_RS03055 (ABNK63_03050) - 697139..697684 (+) 546 WP_350016648.1 pilus assembly protein PilP -
  ABNK63_RS03060 (ABNK63_03055) - 697740..699899 (+) 2160 WP_350016649.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37891.45 Da        Isoelectric Point: 4.5203

>NTDB_id=1009305 ABNK63_RS03040 WP_350016646.1 694703..695761(+) (pilM) [Rhodanobacter sp. IGA1.0]
MGLFTPKKPALIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGDAIRRALARSGSKLKHAAAA
VAGSAVITRIIPMTSELSDDDLEGQIQVEANQYIPYPIDEVSLDYEVLGPVRDNPDMNNVLLAASRTENVDMRVAALDLG
GLTAAVIDVEAFAMENAFAMIADQLNVSREALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRFGLSYEE
AGRAKRKGGLPESYETEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLGPMLEEQLGVPCVVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1009305 ABNK63_RS03040 WP_350016646.1 694703..695761(+) (pilM) [Rhodanobacter sp. IGA1.0]
GTGGGGCTCTTTACACCGAAGAAGCCGGCGCTGATTGGTGTCGACATCAGTTCGACTGCCGTCAAGCTGCTGCAGCTAAG
TCAGGCGGGTGGCCGTTATCGCGTGGAGCACTACGCGGTCGAGCCGCTGCCGCCGAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGTGACGCGATTCGTCGCGCGCTGGCGCGCTCGGGCTCCAAGCTCAAGCACGCGGCGGCGGCG
GTGGCCGGCTCTGCCGTGATCACCCGCATCATCCCGATGACCAGCGAGCTGTCCGACGATGACCTGGAAGGCCAGATCCA
GGTCGAGGCGAACCAGTACATCCCGTATCCGATCGACGAAGTCAGTCTCGACTACGAGGTGCTTGGTCCGGTCCGCGACA
ACCCCGACATGAACAACGTGCTGCTGGCGGCCTCGCGCACCGAGAACGTCGACATGCGGGTGGCCGCGCTGGACCTGGGC
GGACTCACCGCCGCGGTGATCGACGTGGAGGCGTTCGCGATGGAGAACGCCTTCGCGATGATCGCCGACCAGCTCAATGT
CAGTCGCGAAGCCCTGGTGGCCGTGGTCGACATCGGCGCCACCATGACCACGCTGTCGGTGCTGCGCAACCAGCGCACCA
TCTATTCGCGTGAGCAGGTCTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGGCGCTTCGGCCTTTCCTACGAGGAA
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCCTACGAGACCGAGGCGCTGGAGCCGTTCAAGGAATCGCTGAT
CCAGCAAATCAGCCGTCTGCTGCAGTTCTTCTTTGCCGGCAGTGAGTACAGCAAGGTCGACCAGGTCGTGCTGGCCGGTG
GCTGCGCGTCGATCGAAGGCCTTGGTCCGATGCTCGAAGAGCAGCTCGGCGTGCCCTGCGTCGTCGCCAATCCGCTGGCC
CGCATGTCGCTGTCGCCTCGGGTCCAGGCGCAGTCGCTGGCGCAGGATGCCCCCGCGTTGATGATTGCGGTGGGCCTCGC
CTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

51.143

99.432

0.509
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.432

Multiple sequence alignment