Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABKA15_RS08045 Genome accession   NZ_CP157941
Coordinates   1638788..1639279 (-) Length   163 a.a.
NCBI ID   WP_106388308.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1633788..1644279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS08030 (ABKA15_08020) - 1636693..1637637 (+) 945 WP_049513873.1 magnesium transporter CorA family protein -
  ABKA15_RS08035 (ABKA15_08025) - 1637653..1638330 (+) 678 WP_049513871.1 DUF1129 family protein -
  ABKA15_RS08040 (ABKA15_08030) rpsR 1638512..1638751 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ABKA15_RS08045 (ABKA15_08035) ssb 1638788..1639279 (-) 492 WP_106388308.1 single-stranded DNA-binding protein Machinery gene
  ABKA15_RS08050 (ABKA15_08040) rpsF 1639291..1639581 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  ABKA15_RS08055 (ABKA15_08045) - 1639849..1640891 (+) 1043 Protein_1574 bifunctional glycosyltransferase family 2/GtrA family protein -
  ABKA15_RS08060 (ABKA15_08050) - 1640888..1641793 (+) 906 WP_192208568.1 phosphodiester glycosidase family protein -
  ABKA15_RS08065 (ABKA15_08055) - 1641768..1642178 (+) 411 WP_049513864.1 hypothetical protein -
  ABKA15_RS08070 (ABKA15_08060) - 1642413..1643018 (-) 606 WP_049513862.1 histidine phosphatase family protein -
  ABKA15_RS08075 (ABKA15_08065) - 1643019..1643612 (-) 594 WP_003030523.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18291.99 Da        Isoelectric Point: 4.9008

>NTDB_id=1009140 ABKA15_RS08045 WP_106388308.1 1638788..1639279(-) (ssb) [Streptococcus sp. KHUD_010]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSSGSYTSNNFGNSSSNFGNSTSVNQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1009140 ABKA15_RS08045 WP_106388308.1 1638788..1639279(-) (ssb) [Streptococcus sp. KHUD_010]
ATGATAAATAACGTTGTACTTGTGGGTCGTATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACATTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATCAACGTTGTGATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCCCTCATCGGAATTACCGGTCGGATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGATAATTTCCAACTGTTAGAAAGCCGTAC
CAGCCGTGAAGGTCAATCTTCTGGTAGCTATACTTCTAATAACTTCGGAAATTCATCTTCCAATTTTGGGAACTCAACTT
CTGTTAACCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGGAACACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment