Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   H0503_RS08670 Genome accession   NZ_LR822009
Coordinates   1674024..1674341 (-) Length   105 a.a.
NCBI ID   WP_082309152.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669024..1679341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS08640 (STHERMO_1945) - 1669384..1670046 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H0503_RS08645 (STHERMO_1946) - 1670143..1670586 (-) 444 WP_084829882.1 CAAX protease -
  H0503_RS10080 (STHERMO_1947) - 1670660..1671085 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  H0503_RS08655 (STHERMO_1949) - 1671328..1671525 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H0503_RS08660 (STHERMO_1950) - 1671774..1672967 (-) 1194 WP_084831204.1 acetate kinase -
  H0503_RS08665 (STHERMO_1951) comGH 1673023..1673979 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0503_RS08670 (STHERMO_1952) comGG 1674024..1674341 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0503_RS08675 (STHERMO_1953) comGF 1674319..1674756 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0503_RS08680 (STHERMO_1954) comGE 1674740..1675033 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0503_RS08685 (STHERMO_1955) comGD 1675005..1675433 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0503_RS08690 (STHERMO_1956) comGC 1675393..1675719 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0503_RS08695 (STHERMO_1957) comGB 1675716..1676816 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0503_RS08700 (STHERMO_1958) comGA/cglA/cilD 1676698..1677639 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H0503_RS08705 (STHERMO_1959) - 1677720..1678082 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11840.93 Da        Isoelectric Point: 10.6334

>NTDB_id=1009078 H0503_RS08670 WP_082309152.1 1674024..1674341(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_19]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGSFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1009078 H0503_RS08670 WP_082309152.1 1674024..1674341(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTTCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362

Multiple sequence alignment