Detailed information NTG0100898

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: N837_RS06795
• Genome accession: NZ_CP006689
• Coordinates: 1294159..1295166 (+)
• Length: 335 a.a.
• NCBI ID: WP_002856258.1
• Uniprot ID: Q9PMT7
• Organism: Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1289159..1300166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N837_RS06780 (N920_06815)	nrfH	1290426..1290941 (-)	516	WP_010891930.1	cytochrome c nitrite reductase small subunit	-
N837_RS06785 (N920_06820)	ppk	1291106..1293214 (+)	2109	WP_223209681.1	RNA degradosome polyphosphate kinase	-
N837_RS06790 (N920_06825)	-	1293658..1294068 (-)	411	WP_002783915.1	hypothetical protein	-
N837_RS06795 (N920_06830)	ruvB	1294159..1295166 (+)	1008	WP_002856258.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
N837_RS06800 (N920_06835)	amaA	1295170..1296213 (+)	1044	WP_002856044.1	AI-2E family transporter	-
N837_RS06805 (N920_06840)	fumC	1296243..1297634 (-)	1392	WP_002857888.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37311.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=100898 N837_RS06795 WP_002856258.1 1294159..1295166(+) (ruvB) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=100898 N837_RS06795 WP_002856258.1 1294159..1295166(+) (ruvB) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGAGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTGCGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGGCTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• PDB: 3PFI

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.162	99.701	0.69
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Synechocystis sp. PCC 6803	49.221	95.821	0.472
ruvB	Streptococcus pneumoniae TIGR4	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae R6	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae D39	48.024	98.209	0.472