Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP39_RS08035 Genome accession   NZ_CP157882
Coordinates   1753857..1754327 (-) Length   156 a.a.
NCBI ID   WP_349844403.1    Uniprot ID   -
Organism   Pantoea dispersa strain XJ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1748857..1759327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP39_RS07985 (ABNP39_07975) - 1748969..1749535 (-) 567 WP_349844385.1 phage N-6-adenine-methyltransferase -
  ABNP39_RS07990 (ABNP39_07980) - 1749582..1749911 (-) 330 WP_349844387.1 hypothetical protein -
  ABNP39_RS07995 (ABNP39_07985) - 1750187..1750444 (-) 258 WP_349844389.1 hypothetical protein -
  ABNP39_RS08000 (ABNP39_07990) - 1750573..1751547 (-) 975 WP_349844391.1 hypothetical protein -
  ABNP39_RS08005 (ABNP39_07995) - 1751544..1751786 (-) 243 WP_349844392.1 DNA polymerase III subunit theta -
  ABNP39_RS08010 (ABNP39_08000) - 1751815..1751991 (-) 177 WP_349844394.1 hypothetical protein -
  ABNP39_RS08015 (ABNP39_08005) - 1752173..1752403 (-) 231 WP_349844396.1 hypothetical protein -
  ABNP39_RS08020 (ABNP39_08010) - 1752393..1752578 (-) 186 WP_349844398.1 hypothetical protein -
  ABNP39_RS08025 (ABNP39_08015) - 1752575..1753474 (-) 900 WP_349844400.1 phosphoadenosine phosphosulfate reductase family protein -
  ABNP39_RS08030 (ABNP39_08020) - 1753516..1753830 (-) 315 WP_349844401.1 hypothetical protein -
  ABNP39_RS08035 (ABNP39_08025) ssb 1753857..1754327 (-) 471 WP_349844403.1 single-stranded DNA-binding protein Machinery gene
  ABNP39_RS08040 (ABNP39_08030) - 1754327..1754956 (-) 630 WP_349844405.1 ERF family protein -
  ABNP39_RS08045 (ABNP39_08035) - 1754967..1755353 (-) 387 WP_349844407.1 hypothetical protein -
  ABNP39_RS08050 (ABNP39_08040) - 1755862..1756110 (+) 249 WP_349844409.1 hypothetical protein -
  ABNP39_RS08055 (ABNP39_08045) - 1756198..1756335 (+) 138 WP_349844410.1 DUF2256 domain-containing protein -
  ABNP39_RS08060 (ABNP39_08050) - 1756558..1756869 (-) 312 WP_349844412.1 hypothetical protein -
  ABNP39_RS08065 (ABNP39_08055) - 1756875..1757192 (-) 318 WP_349844414.1 antitermination protein N -
  ABNP39_RS08070 (ABNP39_08060) - 1757616..1757819 (+) 204 WP_262264187.1 hypothetical protein -
  ABNP39_RS08075 (ABNP39_08065) - 1758134..1759081 (-) 948 WP_349844416.1 P63C domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17325.18 Da        Isoelectric Point: 8.4053

>NTDB_id=1008870 ABNP39_RS08035 WP_349844403.1 1753857..1754327(-) (ssb) [Pantoea dispersa strain XJ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANIKLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGVMQMLGGKQEGGAGNRSQQSSPQQRQGGQSTRQPNNDHQFDYSDEPPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1008870 ABNP39_RS08035 WP_349844403.1 1753857..1754327(-) (ssb) [Pantoea dispersa strain XJ2]
ATGGCTAGTCGTGGAGTTAACAAAGTAATCCTGGTCGGAAATTTGGGGCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTAAGCTGGCGACCAGTGAGAGTTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AATGGCACCGCGTAGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAACTGCGCACCCGTAAATGGCAGGACCAGAGCGGCCAGGACAAATACACTACCGAGGTGGTGGTGAACGTTGG
CGGCGTAATGCAGATGTTAGGTGGCAAGCAGGAAGGTGGCGCGGGAAACCGATCGCAGCAATCATCTCCGCAGCAGCGCC
AGGGTGGGCAATCTACTCGACAGCCGAATAACGATCACCAGTTCGATTACAGCGACGAACCACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.842

100

0.724
  ssb Glaesserella parasuis strain SC1401

66.379

74.359

0.494
  ssb Neisseria meningitidis MC58

46.528

92.308

0.429
  ssb Neisseria gonorrhoeae MS11

46.528

92.308

0.429

Multiple sequence alignment