Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABNP43_RS11345 Genome accession   NZ_CP157878
Coordinates   2215486..2215779 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain SCu11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210486..2220779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS11295 (ABNP43_11285) sinR 2210650..2210985 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ABNP43_RS11300 (ABNP43_11290) - 2211053..2211853 (-) 801 WP_008342195.1 TasA family protein -
  ABNP43_RS11305 (ABNP43_11295) - 2211912..2212484 (-) 573 WP_041091749.1 signal peptidase I -
  ABNP43_RS11310 (ABNP43_11300) tapA 2212534..2213061 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  ABNP43_RS11315 (ABNP43_11305) - 2213314..2213640 (+) 327 WP_025207617.1 DUF3889 domain-containing protein -
  ABNP43_RS11320 (ABNP43_11310) - 2213675..2213869 (-) 195 WP_008342191.1 YqzE family protein -
  ABNP43_RS11325 (ABNP43_11315) comGG 2213930..2214313 (-) 384 WP_242730662.1 competence type IV pilus minor pilin ComGG -
  ABNP43_RS11330 (ABNP43_11320) comGF 2214310..2214807 (-) 498 WP_349924809.1 competence type IV pilus minor pilin ComGF -
  ABNP43_RS11335 (ABNP43_11325) comGE 2214749..2215063 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  ABNP43_RS11340 (ABNP43_11330) comGD 2215047..2215493 (-) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  ABNP43_RS11345 (ABNP43_11335) comGC 2215486..2215779 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ABNP43_RS11350 (ABNP43_11340) comGB 2215797..2216837 (-) 1041 WP_349924813.1 competence type IV pilus assembly protein ComGB -
  ABNP43_RS11355 (ABNP43_11345) comGA 2216818..2217888 (-) 1071 WP_349924815.1 competence type IV pilus ATPase ComGA Machinery gene
  ABNP43_RS11360 (ABNP43_11350) - 2218347..2219216 (-) 870 WP_007501231.1 STAS domain-containing protein -
  ABNP43_RS11370 (ABNP43_11360) - 2219442..2219822 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABNP43_RS11375 (ABNP43_11365) - 2220035..2220277 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=1008825 ABNP43_RS11345 WP_008342186.1 2215486..2215779(-) (comGC) [Bacillus altitudinis strain SCu11]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1008825 ABNP43_RS11345 WP_008342186.1 2215486..2215779(-) (comGC) [Bacillus altitudinis strain SCu11]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment