Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABNP43_RS11355 Genome accession   NZ_CP157878
Coordinates   2216818..2217888 (-) Length   356 a.a.
NCBI ID   WP_349924815.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2211818..2222888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS11305 (ABNP43_11295) - 2211912..2212484 (-) 573 WP_041091749.1 signal peptidase I -
  ABNP43_RS11310 (ABNP43_11300) tapA 2212534..2213061 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  ABNP43_RS11315 (ABNP43_11305) - 2213314..2213640 (+) 327 WP_025207617.1 DUF3889 domain-containing protein -
  ABNP43_RS11320 (ABNP43_11310) - 2213675..2213869 (-) 195 WP_008342191.1 YqzE family protein -
  ABNP43_RS11325 (ABNP43_11315) comGG 2213930..2214313 (-) 384 WP_242730662.1 competence type IV pilus minor pilin ComGG -
  ABNP43_RS11330 (ABNP43_11320) comGF 2214310..2214807 (-) 498 WP_349924809.1 competence type IV pilus minor pilin ComGF -
  ABNP43_RS11335 (ABNP43_11325) comGE 2214749..2215063 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  ABNP43_RS11340 (ABNP43_11330) comGD 2215047..2215493 (-) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  ABNP43_RS11345 (ABNP43_11335) comGC 2215486..2215779 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ABNP43_RS11350 (ABNP43_11340) comGB 2215797..2216837 (-) 1041 WP_349924813.1 competence type IV pilus assembly protein ComGB -
  ABNP43_RS11355 (ABNP43_11345) comGA 2216818..2217888 (-) 1071 WP_349924815.1 competence type IV pilus ATPase ComGA Machinery gene
  ABNP43_RS11360 (ABNP43_11350) - 2218347..2219216 (-) 870 WP_007501231.1 STAS domain-containing protein -
  ABNP43_RS11370 (ABNP43_11360) - 2219442..2219822 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABNP43_RS11375 (ABNP43_11365) - 2220035..2220277 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ABNP43_RS11380 (ABNP43_11370) - 2220326..2220964 (-) 639 WP_349924816.1 MBL fold metallo-hydrolase -
  ABNP43_RS11385 (ABNP43_11375) - 2221125..2221298 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  ABNP43_RS11390 (ABNP43_11380) - 2221323..2221637 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40425.80 Da        Isoelectric Point: 9.2172

>NTDB_id=1008826 ABNP43_RS11355 WP_349924815.1 2216818..2217888(-) (comGA) [Bacillus altitudinis strain SCu11]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRSVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKRTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1008826 ABNP43_RS11355 WP_349924815.1 2216818..2217888(-) (comGA) [Bacillus altitudinis strain SCu11]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGTTAAGACGCGGTCAAGTGTTTGTTCGGCTTTCTACATTACCGACTGTAAATGATGAAAGTTTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATCCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGT
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAGTAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGAACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649

Multiple sequence alignment