Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABNP43_RS11295 Genome accession   NZ_CP157878
Coordinates   2210650..2210985 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205650..2215985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS11275 (ABNP43_11265) gcvT 2206126..2207223 (-) 1098 WP_017357975.1 glycine cleavage system aminomethyltransferase GcvT -
  ABNP43_RS11280 (ABNP43_11270) - 2207785..2209455 (+) 1671 WP_007501213.1 SNF2-related protein -
  ABNP43_RS11285 (ABNP43_11275) - 2209470..2210267 (+) 798 WP_065460692.1 YqhG family protein -
  ABNP43_RS11290 (ABNP43_11280) - 2210452..2210616 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  ABNP43_RS11295 (ABNP43_11285) sinR 2210650..2210985 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ABNP43_RS11300 (ABNP43_11290) - 2211053..2211853 (-) 801 WP_008342195.1 TasA family protein -
  ABNP43_RS11305 (ABNP43_11295) - 2211912..2212484 (-) 573 WP_041091749.1 signal peptidase I -
  ABNP43_RS11310 (ABNP43_11300) tapA 2212534..2213061 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  ABNP43_RS11315 (ABNP43_11305) - 2213314..2213640 (+) 327 WP_025207617.1 DUF3889 domain-containing protein -
  ABNP43_RS11320 (ABNP43_11310) - 2213675..2213869 (-) 195 WP_008342191.1 YqzE family protein -
  ABNP43_RS11325 (ABNP43_11315) comGG 2213930..2214313 (-) 384 WP_242730662.1 competence type IV pilus minor pilin ComGG -
  ABNP43_RS11330 (ABNP43_11320) comGF 2214310..2214807 (-) 498 WP_349924809.1 competence type IV pilus minor pilin ComGF -
  ABNP43_RS11335 (ABNP43_11325) comGE 2214749..2215063 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  ABNP43_RS11340 (ABNP43_11330) comGD 2215047..2215493 (-) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  ABNP43_RS11345 (ABNP43_11335) comGC 2215486..2215779 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1008824 ABNP43_RS11295 WP_017357978.1 2210650..2210985(+) (sinR) [Bacillus altitudinis strain SCu11]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1008824 ABNP43_RS11295 WP_017357978.1 2210650..2210985(+) (sinR) [Bacillus altitudinis strain SCu11]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment