Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP44_RS02420 Genome accession   NZ_CP157876
Coordinates   561282..561803 (+) Length   173 a.a.
NCBI ID   WP_350025096.1    Uniprot ID   -
Organism   Providencia rettgeri strain 9923     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 556282..566803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP44_RS02410 (ABNP44_02400) - 556549..557745 (+) 1197 WP_109912591.1 amino acid aminotransferase -
  ABNP44_RS02415 (ABNP44_02405) uvrA 557825..560659 (-) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  ABNP44_RS02420 (ABNP44_02410) ssb 561282..561803 (+) 522 WP_350025096.1 single-stranded DNA-binding protein Machinery gene
  ABNP44_RS02425 (ABNP44_02415) - 562078..562485 (-) 408 WP_350025097.1 helix-turn-helix domain-containing protein -
  ABNP44_RS02430 (ABNP44_02420) - 562725..563897 (-) 1173 WP_350025098.1 MFS transporter -
  ABNP44_RS02435 (ABNP44_02425) ivbL 564231..564320 (+) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  ABNP44_RS02440 (ABNP44_02430) ilvB 564424..566121 (+) 1698 WP_117163032.1 acetolactate synthase large subunit -
  ABNP44_RS02445 (ABNP44_02435) ilvN 566124..566408 (+) 285 WP_004914949.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18605.66 Da        Isoelectric Point: 4.9468

>NTDB_id=1008774 ABNP44_RS02420 WP_350025096.1 561282..561803(+) (ssb) [Providencia rettgeri strain 9923]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDSPSQGQGGQGGWGQPQQPQAAQQFSGGGAPVARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1008774 ABNP44_RS02420 WP_350025096.1 561282..561803(+) (ssb) [Providencia rettgeri strain 9923]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAAGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGTGGTGATTCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGCGGCACAACAATTCAGTGGTGGTGGAGCGCCAGTCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.601
  ssb Neisseria meningitidis MC58

46.591

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474

Multiple sequence alignment