Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP46_RS01870 Genome accession   NZ_CP157875
Coordinates   388116..388685 (-) Length   189 a.a.
NCBI ID   WP_349920742.1    Uniprot ID   -
Organism   Aeromonas veronii strain Ichip_C_3-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 383116..393685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP46_RS01845 (ABNP46_01840) - 383522..385477 (-) 1956 WP_349920738.1 ligand-gated channel protein -
  ABNP46_RS01850 (ABNP46_01845) - 385833..386045 (-) 213 WP_349920739.1 cold-shock protein -
  ABNP46_RS01855 (ABNP46_01850) yjbD 386437..386721 (-) 285 WP_349920740.1 DUF3811 domain-containing protein -
  ABNP46_RS01860 (ABNP46_01855) - 387022..387144 (+) 123 WP_080675244.1 hypothetical protein -
  ABNP46_RS01865 (ABNP46_01860) - 387191..387961 (-) 771 WP_349920741.1 transporter substrate-binding domain-containing protein -
  ABNP46_RS01870 (ABNP46_01865) ssb 388116..388685 (-) 570 WP_349920742.1 single-stranded DNA-binding protein Machinery gene
  ABNP46_RS01875 (ABNP46_01870) - 389232..389876 (+) 645 WP_349920743.1 LuxR C-terminal-related transcriptional regulator -
  ABNP46_RS01880 (ABNP46_01875) - 389876..390322 (+) 447 WP_349920744.1 curli production assembly/transport protein CsgE -
  ABNP46_RS01885 (ABNP46_01880) - 390334..390735 (+) 402 WP_349920745.1 curli assembly protein CsgF -
  ABNP46_RS01890 (ABNP46_01885) - 390743..391594 (+) 852 WP_349920746.1 CsgG/HfaB family protein -
  ABNP46_RS01895 (ABNP46_01890) - 391841..392362 (+) 522 WP_349920747.1 curlin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21057.43 Da        Isoelectric Point: 5.9301

>NTDB_id=1008744 ABNP46_RS01870 WP_349920742.1 388116..388685(-) (ssb) [Aeromonas veronii strain Ichip_C_3-7]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITIATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGGQQSQGNWGQPQQTPQQNMQRPAAAPQQNMQQQQG
GYGRPQQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1008744 ABNP46_RS01870 WP_349920742.1 388116..388685(-) (ssb) [Aeromonas veronii strain Ichip_C_3-7]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAGGATCCTGAAGTGCGCTACATGCCGAGTGG
CGGTGCCGTGACCAACATCACCATAGCCACCTCCGAGACCTGGCGTGACAAGCAGACCGGTGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGTGTTCATGGGTAAACTGGCCGAGGTCGCGGGTGAATACCTGAAGAAGGGTTCCCAGGTTTATGTC
GAAGGCAAGCTGCAGACTCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGTCGCCCGCAAGGCGGTCAGGGCATGGGTGGTCAGCAATCCCAGGGCAACTGGG
GCCAGCCACAGCAGACTCCCCAGCAGAACATGCAGCGCCCTGCCGCCGCACCGCAGCAGAACATGCAACAGCAACAGGGT
GGCTATGGCCGTCCGCAGCAACAGCCGCAGTCCGCGCCGCCGGTCTACAACGAGCCGCCGATGGACTTCGACGACGACAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.557

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.301

98.413

0.534
  ssb Neisseria meningitidis MC58

47.872

99.471

0.476
  ssb Neisseria gonorrhoeae MS11

47.872

99.471

0.476

Multiple sequence alignment