Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABNP33_RS17560 Genome accession   NZ_CP157872
Coordinates   3707793..3708926 (+) Length   377 a.a.
NCBI ID   WP_349913741.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3702793..3713926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS17535 (ABNP33_17530) - 3703044..3703250 (-) 207 WP_262440748.1 hypothetical protein -
  ABNP33_RS17540 (ABNP33_17535) oprC 3703300..3705414 (-) 2115 WP_262440747.1 TonB-dependent copper receptor -
  ABNP33_RS17545 (ABNP33_17540) - 3705487..3705921 (-) 435 WP_044102552.1 DUF2946 family protein -
  ABNP33_RS17550 (ABNP33_17545) def 3705965..3706495 (-) 531 WP_002114101.1 peptide deformylase -
  ABNP33_RS17555 (ABNP33_17550) tsaP 3706618..3707772 (+) 1155 WP_262440746.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABNP33_RS17560 (ABNP33_17555) dprA 3707793..3708926 (+) 1134 WP_349913741.1 DNA-processing protein DprA Machinery gene
  ABNP33_RS17565 (ABNP33_17560) yrdC 3708978..3709547 (+) 570 WP_002114056.1 Sua5/YciO/YrdC/YwlC family protein -
  ABNP33_RS17570 (ABNP33_17565) - 3709941..3710861 (-) 921 WP_262440745.1 DMT family transporter -
  ABNP33_RS17575 (ABNP33_17570) - 3710965..3711618 (-) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -
  ABNP33_RS17580 (ABNP33_17575) nepI 3711754..3712968 (+) 1215 WP_349913743.1 MFS transporter -
  ABNP33_RS17585 (ABNP33_17580) yeaM 3712990..3713754 (+) 765 WP_282463803.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41916.59 Da        Isoelectric Point: 6.7180

>NTDB_id=1008717 ABNP33_RS17560 WP_349913741.1 3707793..3708926(+) (dprA) [Acinetobacter pittii strain bac73]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQPVGLSQWRNLGLHANHLKRVAEFQTAQGQAQFEKLIEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSCLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEQAVISSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1008717 ABNP33_RS17560 WP_349913741.1 3707793..3708926(+) (dprA) [Acinetobacter pittii strain bac73]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGTGAAAAGGCAGTCCAACCTGTTGGATTATCTCAATGGCGCAATCTTGGCTTAC
ATGCTAATCATTTAAAACGTGTAGCTGAATTTCAAACCGCTCAGGGCCAAGCTCAGTTTGAAAAACTAATTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGG
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCTGTTTGAGTTTAGGTGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGGGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACACAGTGGCAAAGTCAGCAACAAAACTCCACCGAGCAGGCTGTAATTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.981

100

0.91

  dprA Acinetobacter baumannii strain A118

90.451

100

0.905

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

42.943

88.329

0.379


Multiple sequence alignment