Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   ABNP33_RS04400 Genome accession   NZ_CP157872
Coordinates   933073..935505 (+) Length   810 a.a.
NCBI ID   WP_349914280.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 928073..940505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS04370 (ABNP33_04370) - 928224..929165 (-) 942 WP_002118998.1 hypothetical protein -
  ABNP33_RS04375 (ABNP33_04375) - 929411..929899 (+) 489 WP_080649425.1 YaiI/YqxD family protein -
  ABNP33_RS04380 (ABNP33_04380) - 929907..930815 (+) 909 WP_032004411.1 EamA family transporter -
  ABNP33_RS04385 (ABNP33_04385) - 930845..930952 (-) 108 Protein_837 PilZ domain-containing protein -
  ABNP33_RS04390 (ABNP33_04390) lolC 931075..932310 (+) 1236 WP_004790618.1 lipoprotein-releasing ABC transporter permease subunit -
  ABNP33_RS04395 (ABNP33_04395) lolD 932303..932989 (+) 687 WP_086265479.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABNP33_RS04400 (ABNP33_04400) comA/comEC 933073..935505 (+) 2433 WP_349914280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNP33_RS04405 (ABNP33_04405) - 935458..936441 (-) 984 WP_002118440.1 lysophospholipid acyltransferase family protein -
  ABNP33_RS04410 (ABNP33_04410) sppA 936575..937591 (+) 1017 WP_005067744.1 signal peptide peptidase SppA -
  ABNP33_RS04415 (ABNP33_04415) - 937615..938415 (+) 801 WP_262451232.1 alpha/beta hydrolase -
  ABNP33_RS04420 (ABNP33_04420) purN 938491..939120 (-) 630 WP_016140245.1 phosphoribosylglycinamide formyltransferase -
  ABNP33_RS04425 (ABNP33_04425) purM 939117..940187 (-) 1071 WP_349914283.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 810 a.a.        Molecular weight: 92808.31 Da        Isoelectric Point: 9.3057

>NTDB_id=1008691 ABNP33_RS04400 WP_349914280.1 933073..935505(+) (comA/comEC) [Acinetobacter pittii strain bac73]
MLKLILMGWIGGIAFMGRDIPLIMQYGWVGKVLLVMGFIFYIFKRNIFLNRPILKAIYCLVCAISFFTIGHQYAQHTLNE
RLQLRQMQPKSLDIVVYVDRISEEKEDKTQQPVQVLGQSLHPVNWLLYLKNQKVNSAIDEPKLQLGHYYRISGKTKPAHS
YAVAGVFDQEQWFIQRNIMSGFSVQHIEPLSSDEIYQLGYQHHLKEQQKFFNRQKLNVEKLRLTFRLMLKQSPLQNKGLL
LALLTGDESLLNDEIKNQFKELGISHLLAISGPHVLIFAIMLSWVLHQLIRRYYPQLYLRQPKQIWAMIPLCFGVLIYTA
FVGFEIPALRTLLSVFLFASLVLIKVPVKPFSLLVYSASLLLLFDPFSVLSAGFWLSYGSCFILLRIYQTIEQAPNLVST
SLLSRIILFSKILIESQGKIFIALCPLMLIFFQQISWVAPFTNIIAVPLLGGMIVPLNIFAACVWLIFNSFGNLLFQIND
VLISIVLSCFNLLEKLSLPLQGFSLTPLDLVCLSFVIIILFLPRGVLPKSWGLICCLPLIIPDKSSQQVQLNIIDVGQGQ
AIFLQHPQQTWLIDTGGSYDEKAFSIGQNVVIPYLRQKGIKQLDHVVLSHLDQDHSGAFPSIAQAFPIKQVISNERWTEQ
IKEPFTYCHQGQKWQYPQLDIEILWPKEKDLNLVSSNQNQYSCVVYIHLKQINGYQNYLIMGDAGWEAEYQLMKEYPDLK
VDVLVLGHHGSKHSSAYDFLATLKPKLVVASAGFNNRYGHPSKEVLARVQALNIPFKSTVEQGTLSFVSRNQVMVLYTRR
FERTWLHRNL

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=1008691 ABNP33_RS04400 WP_349914280.1 933073..935505(+) (comA/comEC) [Acinetobacter pittii strain bac73]
ATGTTAAAACTTATTTTAATGGGGTGGATTGGGGGTATTGCATTTATGGGGAGAGATATCCCTTTAATAATGCAATATGG
GTGGGTAGGTAAAGTCTTGCTTGTTATGGGCTTTATTTTTTATATTTTTAAGAGAAATATTTTCTTAAATCGCCCCATAT
TAAAAGCCATTTACTGTCTAGTCTGTGCTATTAGTTTTTTTACTATAGGACATCAATATGCTCAGCATACCTTAAATGAA
AGATTACAACTGCGACAAATGCAGCCTAAATCTTTAGATATTGTTGTGTATGTCGACCGTATAAGTGAAGAAAAAGAAGA
TAAGACACAGCAACCCGTTCAGGTACTAGGGCAGTCCTTACATCCCGTCAATTGGCTATTATATTTAAAAAATCAAAAAG
TAAACTCAGCCATAGATGAGCCAAAATTACAATTAGGTCATTATTATCGAATTTCTGGCAAAACCAAACCTGCTCATAGT
TACGCAGTGGCTGGTGTTTTTGACCAAGAACAGTGGTTCATTCAACGAAATATAATGTCCGGTTTTAGTGTTCAGCATAT
TGAGCCTTTAAGCTCTGATGAAATTTATCAGTTGGGTTATCAACATCATTTAAAAGAGCAACAAAAATTCTTTAACAGAC
AAAAGTTAAATGTAGAAAAGTTGCGCCTAACATTTAGATTAATGTTAAAACAATCTCCTTTGCAAAATAAGGGTCTGTTA
TTAGCTTTGTTAACAGGGGACGAAAGTCTCTTAAATGATGAGATTAAAAATCAATTTAAGGAATTAGGAATCTCTCATTT
GTTAGCCATTTCAGGGCCTCATGTACTCATTTTTGCCATCATGTTGTCTTGGGTATTACATCAATTAATAAGACGTTATT
ATCCGCAGCTTTATTTGCGTCAACCTAAACAAATATGGGCTATGATTCCATTATGTTTCGGTGTTTTAATTTATACGGCA
TTTGTTGGTTTTGAAATTCCCGCCTTAAGAACTTTACTCTCAGTATTTTTATTTGCTTCTTTGGTATTGATTAAAGTGCC
TGTTAAGCCATTTTCACTCTTGGTTTATAGTGCAAGTCTACTTTTACTTTTCGATCCCTTTAGTGTTTTATCAGCAGGCT
TTTGGCTGTCTTATGGTTCTTGCTTTATTTTATTACGGATTTATCAAACTATAGAGCAGGCTCCAAATCTTGTTTCAACT
AGTCTGTTATCTAGAATCATTCTTTTCAGTAAAATTTTAATTGAATCTCAAGGCAAAATATTTATTGCCTTATGTCCTTT
AATGCTGATTTTCTTTCAACAGATTTCATGGGTTGCTCCTTTTACAAATATTATTGCAGTTCCTTTACTCGGAGGAATGA
TTGTTCCTTTAAACATTTTTGCAGCTTGTGTATGGCTTATTTTTAACTCATTCGGAAATTTACTTTTTCAAATTAATGAT
GTCCTGATTAGTATAGTACTGTCATGTTTTAATCTTTTAGAAAAGTTATCTCTACCATTACAAGGTTTTAGCCTCACACC
ACTTGATTTAGTGTGCCTTAGCTTCGTTATTATTATCTTATTTTTACCGCGCGGGGTTTTACCCAAATCTTGGGGGCTAA
TATGCTGTTTACCCTTGATCATTCCGGATAAGTCGTCCCAGCAAGTTCAATTAAATATTATAGACGTAGGACAGGGGCAA
GCTATTTTCTTGCAGCATCCGCAGCAGACATGGCTCATCGATACGGGTGGGTCTTATGATGAGAAAGCTTTTAGTATTGG
TCAAAATGTGGTGATTCCATATTTACGTCAAAAGGGAATTAAACAACTGGATCACGTCGTACTGTCTCATCTTGATCAAG
ATCATAGCGGAGCATTTCCTTCAATCGCTCAGGCTTTTCCTATTAAACAAGTCATATCAAATGAACGATGGACAGAGCAA
ATTAAAGAACCATTTACCTATTGTCACCAAGGTCAAAAATGGCAATATCCACAATTAGATATTGAAATCCTTTGGCCTAA
AGAAAAAGATTTAAACTTAGTTTCTTCAAATCAAAATCAATATTCTTGTGTGGTTTATATTCATTTAAAACAGATAAATG
GCTATCAAAATTATTTAATTATGGGTGATGCAGGGTGGGAAGCAGAATATCAACTCATGAAAGAATATCCTGATTTAAAG
GTAGATGTTCTGGTATTAGGTCATCATGGAAGTAAACATAGTTCGGCTTATGACTTTTTAGCGACTCTAAAACCAAAGCT
TGTTGTTGCTTCTGCTGGCTTTAATAATCGTTATGGTCATCCAAGCAAAGAGGTTTTAGCGAGAGTACAAGCACTTAATA
TTCCATTTAAAAGCACAGTTGAGCAAGGAACATTAAGCTTTGTATCTCGCAATCAAGTGATGGTTTTATACACTCGACGT
TTCGAGCGTACTTGGCTTCACAGGAATTTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

70.21

99.877

0.701

  comA/comEC Acinetobacter baumannii strain A118

69.592

99.877

0.695

  comA/comEC Acinetobacter baylyi ADP1

48.831

100

0.49


Multiple sequence alignment