Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABNP33_RS01505 Genome accession   NZ_CP157872
Coordinates   315576..316355 (+) Length   259 a.a.
NCBI ID   WP_033848906.1    Uniprot ID   A0A013STW0
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310576..321355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01490 (ABNP33_01490) ponA 311157..313718 (-) 2562 WP_032004891.1 penicillin-binding protein PBP1a -
  ABNP33_RS01495 (ABNP33_01495) pilM 313880..314938 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  ABNP33_RS01500 (ABNP33_01500) pilN 314938..315579 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  ABNP33_RS01505 (ABNP33_01505) pilO 315576..316355 (+) 780 WP_033848906.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABNP33_RS01510 (ABNP33_01510) pilP 316367..316894 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  ABNP33_RS01515 (ABNP33_01515) pilQ 316957..319083 (+) 2127 WP_057068835.1 type IV pilus secretin PilQ Machinery gene
  ABNP33_RS01520 (ABNP33_01520) aroK 319095..319664 (+) 570 WP_032004887.1 shikimate kinase AroK -
  ABNP33_RS01525 (ABNP33_01525) aroB 319693..320775 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29449.58 Da        Isoelectric Point: 5.7456

>NTDB_id=1008676 ABNP33_RS01505 WP_033848906.1 315576..316355(+) (pilO) [Acinetobacter pittii strain bac73]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1008676 ABNP33_RS01505 WP_033848906.1 315576..316355(+) (pilO) [Acinetobacter pittii strain bac73]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTCCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAACAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCAGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013STW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.732

86.486

0.776
  comO Acinetobacter baylyi ADP1

71.674

89.961

0.645

Multiple sequence alignment