Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABNP33_RS01500 Genome accession   NZ_CP157872
Coordinates   314938..315579 (+) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309938..320579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01480 (ABNP33_01480) - 309982..310314 (+) 333 WP_002116981.1 hypothetical protein -
  ABNP33_RS01485 (ABNP33_01485) rrmA 310317..311141 (+) 825 WP_349913967.1 putative RNA methyltransferase -
  ABNP33_RS01490 (ABNP33_01490) ponA 311157..313718 (-) 2562 WP_032004891.1 penicillin-binding protein PBP1a -
  ABNP33_RS01495 (ABNP33_01495) pilM 313880..314938 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  ABNP33_RS01500 (ABNP33_01500) pilN 314938..315579 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  ABNP33_RS01505 (ABNP33_01505) pilO 315576..316355 (+) 780 WP_033848906.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABNP33_RS01510 (ABNP33_01510) pilP 316367..316894 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  ABNP33_RS01515 (ABNP33_01515) pilQ 316957..319083 (+) 2127 WP_057068835.1 type IV pilus secretin PilQ Machinery gene
  ABNP33_RS01520 (ABNP33_01520) aroK 319095..319664 (+) 570 WP_032004887.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=1008675 ABNP33_RS01500 WP_032004890.1 314938..315579(+) (pilN) [Acinetobacter pittii strain bac73]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1008675 ABNP33_RS01500 WP_032004890.1 314938..315579(+) (pilN) [Acinetobacter pittii strain bac73]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAAAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment