Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ABNP33_RS01510 Genome accession   NZ_CP157872
Coordinates   316367..316894 (+) Length   175 a.a.
NCBI ID   WP_017481730.1    Uniprot ID   A0A010ITU2
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 311367..321894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01495 (ABNP33_01495) pilM 313880..314938 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  ABNP33_RS01500 (ABNP33_01500) pilN 314938..315579 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  ABNP33_RS01505 (ABNP33_01505) pilO 315576..316355 (+) 780 WP_033848906.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABNP33_RS01510 (ABNP33_01510) pilP 316367..316894 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  ABNP33_RS01515 (ABNP33_01515) pilQ 316957..319083 (+) 2127 WP_057068835.1 type IV pilus secretin PilQ Machinery gene
  ABNP33_RS01520 (ABNP33_01520) aroK 319095..319664 (+) 570 WP_032004887.1 shikimate kinase AroK -
  ABNP33_RS01525 (ABNP33_01525) aroB 319693..320775 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  ABNP33_RS01530 (ABNP33_01530) - 320792..321661 (+) 870 WP_039765203.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19253.42 Da        Isoelectric Point: 9.7299

>NTDB_id=1008677 ABNP33_RS01510 WP_017481730.1 316367..316894(+) (pilP) [Acinetobacter pittii strain bac73]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1008677 ABNP33_RS01510 WP_017481730.1 316367..316894(+) (pilP) [Acinetobacter pittii strain bac73]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCTATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A010ITU2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88

  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714


Multiple sequence alignment