Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNP33_RS01005 Genome accession   NZ_CP157872
Coordinates   223129..223716 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain bac73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218129..228716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS00980 (ABNP33_00980) - 218205..219005 (-) 801 WP_262440170.1 SDR family oxidoreductase -
  ABNP33_RS00985 (ABNP33_00985) zntR 219109..219480 (-) 372 WP_068929809.1 MerR family transcriptional regulator -
  ABNP33_RS00990 (ABNP33_00990) tenA 219547..220221 (-) 675 WP_262440169.1 thiaminase II -
  ABNP33_RS00995 (ABNP33_00995) - 220484..221566 (+) 1083 WP_108009816.1 DUF475 domain-containing protein -
  ABNP33_RS01000 (ABNP33_01000) yajR 221713..223077 (+) 1365 WP_005078603.1 MFS transporter -
  ABNP33_RS01005 (ABNP33_01005) ssb 223129..223716 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  ABNP33_RS01010 (ABNP33_01010) - 223757..224080 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  ABNP33_RS01015 (ABNP33_01015) - 224077..224772 (-) 696 WP_202733029.1 AzlC family ABC transporter permease -
  ABNP33_RS01020 (ABNP33_01020) ydcN 224841..225389 (+) 549 WP_002117406.1 XRE family transcriptional regulator -
  ABNP33_RS01025 (ABNP33_01025) - 225695..227137 (+) 1443 WP_002117418.1 amino acid permease -
  ABNP33_RS01030 (ABNP33_01030) - 227203..228702 (-) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=1008673 ABNP33_RS01005 WP_005804461.1 223129..223716(+) (ssb) [Acinetobacter pittii strain bac73]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1008673 ABNP33_RS01005 WP_005804461.1 223129..223716(+) (ssb) [Acinetobacter pittii strain bac73]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment