Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABNP42_RS21025 Genome accession   NZ_CP157868
Coordinates   4065781..4066281 (-) Length   166 a.a.
NCBI ID   WP_025907886.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4060781..4071281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS21005 (ABNP42_20975) rplI 4061939..4062388 (-) 450 WP_025907889.1 50S ribosomal protein L9 -
  ABNP42_RS21010 (ABNP42_20980) - 4062385..4064358 (-) 1974 WP_094910941.1 DHH family phosphoesterase -
  ABNP42_RS21015 (ABNP42_20985) - 4064397..4065344 (-) 948 WP_094910940.1 YybS family protein -
  ABNP42_RS21020 (ABNP42_20990) rpsR 4065480..4065719 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  ABNP42_RS21025 (ABNP42_20995) ssbA 4065781..4066281 (-) 501 WP_025907886.1 single-stranded DNA-binding protein Machinery gene
  ABNP42_RS21030 (ABNP42_21000) rpsF 4066326..4066613 (-) 288 WP_025907885.1 30S ribosomal protein S6 -
  ABNP42_RS21035 (ABNP42_21005) ychF 4066769..4067869 (-) 1101 WP_025907884.1 redox-regulated ATPase YchF -
  ABNP42_RS21040 (ABNP42_21010) - 4068008..4068205 (-) 198 WP_094910939.1 DUF951 domain-containing protein -
  ABNP42_RS21045 (ABNP42_21015) - 4068202..4069113 (-) 912 WP_131887573.1 mechanosensitive ion channel family protein -
  ABNP42_RS21050 (ABNP42_21020) - 4069174..4070190 (-) 1017 WP_094910937.1 hypothetical protein -
  ABNP42_RS21055 (ABNP42_21025) yyaC 4070275..4070895 (+) 621 WP_094910936.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18182.93 Da        Isoelectric Point: 4.7821

>NTDB_id=1008604 ABNP42_RS21025 WP_025907886.1 4065781..4066281(-) (ssbA) [Priestia flexa strain Antcr29]
MMNRVILVGRLTKDPELRYTPNGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDMQRNNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDNDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1008604 ABNP42_RS21025 WP_025907886.1 4065781..4066281(-) (ssbA) [Priestia flexa strain Antcr29]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTGACGAAAGATCCTGAATTACGTTATACCCCCAATGGAGCTGCAGTTGC
AACATTCACACTAGCAGTCAACCGCGCATTTACAAATCAACAGGGTGAACGTGAGGCAGACTTTATTAACTGTGTCGTAT
GGCGTCGTCCTGCTGAAAATGTAGCAAACTTTTTGAAAAAGGGTAGTTTAGCTGGTGTTGATGGACGTTTACAGTCTCGT
AGTTATGAAGGACAAGACGGTCGTCGAGTTTATGTAACAGAGGTTGTGGCAGAAAGTGTGCAATTCTTAGAACCAAAAAG
TGGTGGCGGGGATATGCAACGCAATAACTTTGCTAACACTGGTGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATAATGATCCATTTGCAAATAATGGTGAAACAATCGACATCTCT
GATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72

100

0.759
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361

Multiple sequence alignment